Locus 7398

Sequence ID X_DroMel_CAF1
Location 18,436,562 – 18,436,653
Length 91
Max. P 0.990685
window12125

overview

Window 5

Location 18,436,562 – 18,436,653
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 96.34
Mean single sequence MFE -36.30
Consensus MFE -35.05
Energy contribution -35.50
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -3.32
Structure conservation index 0.97
SVM decision value 2.23
SVM RNA-class probability 0.990685
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18436562 91 - 22224390
AUCCGGCCAAACAGAGCCACGCCACACACGCACGCAAAAAGCAGCAGAGGCGGAUCGUCCUCAUCCUGCUGGCCAGGCUCAUUGUGGCUCC
....(((((....(((((..(((......(....)....(((((..((((((...)).))))...))))))))..)))))....))))).. ( -32.60)
>DroSec_CAF1 2705 91 - 1
AUCCGGCCAAACAGAGCCACGCCACACACGCACGCAAAAAGCAGGAGAGGCGGAUUCUCCUCAUCCUGCUGGCCAGGCUUACUGUGGCUCC
....(((((....(((((..(((......(....)....(((((((((((.(....).)))).))))))))))..)))))....))))).. ( -36.40)
>DroSim_CAF1 573 91 - 1
AUCCGGCCAAACAGAGCCACGCCACACACGCACGCAAAAAGCAGGAGAGGCGGAUCCUCCUCAUCCUGCUGGCCAGGCUCACUGUGGCUCC
....(((((....(((((..(((......(....)....(((((((((((.(....).)))).))))))))))..)))))....))))).. ( -39.90)
>consensus
AUCCGGCCAAACAGAGCCACGCCACACACGCACGCAAAAAGCAGGAGAGGCGGAUCCUCCUCAUCCUGCUGGCCAGGCUCACUGUGGCUCC
....(((((....(((((..(((......(....)....(((((((((((.(....).)))).))))))))))..)))))....))))).. (-35.05 = -35.50 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:52 2006