Locus 7397

Sequence ID X_DroMel_CAF1
Location 18,434,520 – 18,434,615
Length 95
Max. P 0.939452
window12124

overview

Window 4

Location 18,434,520 – 18,434,615
Length 95
Sequences 3
Columns 114
Reading direction forward
Mean pairwise identity 80.80
Mean single sequence MFE -35.97
Consensus MFE -22.69
Energy contribution -23.13
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -2.55
Structure conservation index 0.63
SVM decision value 1.28
SVM RNA-class probability 0.939452
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18434520 95 + 22224390
AUAACUAGU-------AGUUCCCAUUAAAUCGGUUUAGCUGCGCAU--UUCAUGGGUGG--GAUGCCACCUUUGCA--------AUUGGGGUAUCCAAGGUGCAGCUGCCAGAA
.........-------...............(((..((((((((..--..((....))(--((((((.((......--------...)))))))))...))))))))))).... ( -30.30)
>DroSim_CAF1 57641 97 + 1
AUAACUAGU-------AGUUCCCAUUAAAUCGGUUUAGCUGCGCAU--UUCAUGGGUGGGGGGUGCCACCUUUGGA--------AUUGGGGUAUCCAAGGUGCAGCUGCCAGAA
.........-------...............(((..((((((((.(--((((.((((((......)))))).))))--------)((((.....)))).))))))))))).... ( -34.10)
>DroYak_CAF1 39653 112 + 1
AUAACUACUAGUACCUAGUUCCCAUUAAAUCAGGUUAGCUGCGCCUGGUUCAUGGGUGG--AGUGCCAGUUUUGGCAGUGCUGUAUUCGUGUAUCCAAGGUGCAGCUGCCAGAA
......(((((...))))).............(((.((((((((((((..((((((((.--((((((......)))...))).))))))))...)).))))))))))))).... ( -43.50)
>consensus
AUAACUAGU_______AGUUCCCAUUAAAUCGGUUUAGCUGCGCAU__UUCAUGGGUGG__GGUGCCACCUUUGGA________AUUGGGGUAUCCAAGGUGCAGCUGCCAGAA
.............................((....(((((((((......((.((((((......)))))).))...........((((.....)))).)))))))))...)). (-22.69 = -23.13 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:52 2006