Locus 7396

Sequence ID X_DroMel_CAF1
Location 18,433,995 – 18,434,085
Length 90
Max. P 0.966127
window12123

overview

Window 3

Location 18,433,995 – 18,434,085
Length 90
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 76.07
Mean single sequence MFE -20.15
Consensus MFE -12.23
Energy contribution -12.03
Covariance contribution -0.19
Combinations/Pair 1.12
Mean z-score -2.14
Structure conservation index 0.61
SVM decision value 1.59
SVM RNA-class probability 0.966127
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18433995 90 - 22224390
GGACGUUG-------GCAACUUGAUUUAGUGCUCU-CUGACCUCAGUUUAAACAUAAACAGCCGCGUCCAACCCAAUCCCACCCUUUCU------------UC----CCCUUUC
((((((.(-------((....(((.((((......-))))..)))(((((....))))).)))))))))....................------------..----....... ( -19.80)
>DroPse_CAF1 34815 86 - 1
GGACGUUG-------GCAACUUGAUUUAGUGCUCU-CUGACCUCAGUUUAAAUAUAAACAGCCGCGUCCACCCACAUUCAACCCUCUC--------------------CCUUUC
((((((.(-------((....(((.((((......-))))..)))(((((....))))).)))))))))...................--------------------...... ( -19.80)
>DroWil_CAF1 67720 92 - 1
GGACAUGGGCAAUGGGCAACUUGAUUUAGUGCUCUCCUGACCUCAGUUUAAAUAUAAACAGUCGCGUCUUGUCCA--CCUAGCCUACC--------------------CCUUUU
(((((.((((...(((((.((......)))))))....(((....(((((....))))).)))..))))))))).--...........--------------------...... ( -21.20)
>DroYak_CAF1 39108 106 - 1
GGACGUUG-------GCAACUUGAUUUAGUGCUCU-CUGACCUCAGUUUAAACAUAAACAGCCGCGUCCAACCCAAUCUCACCCCUUUUCUUCGGGUGCUCCCAGCUCCACUUC
((((((.(-------((....(((.((((......-))))..)))(((((....))))).)))))))))..........(((((.........)))))................ ( -25.70)
>DroAna_CAF1 53526 85 - 1
GGACGUUG-------GCAACUUGAUUUAGUGCUCU-CUGACCUCAGUUUAAAUAUAAACAGCCGCGUUUCCCCCCCUCCAAGGACUG---------------------UCUUUC
((((((.(-------((....(((.((((......-))))..)))(((((....))))).))))))))).....((.....))....---------------------...... ( -14.60)
>DroPer_CAF1 34907 86 - 1
GGACGUUG-------GCAACUUGAUUUAGUGCUCU-CUGACCUCAGUUUAAAUAUAAACAGCCGCGUCCACCCACCUUCAACCCUCUC--------------------CCUUUC
((((((.(-------((....(((.((((......-))))..)))(((((....))))).)))))))))...................--------------------...... ( -19.80)
>consensus
GGACGUUG_______GCAACUUGAUUUAGUGCUCU_CUGACCUCAGUUUAAAUAUAAACAGCCGCGUCCACCCCAAUCCAACCCUUUC____________________CCUUUC
((((((.........(((.((......))))).............(((((....)))))....))))))............................................. (-12.23 = -12.03 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:51 2006