Locus 7395

Sequence ID X_DroMel_CAF1
Location 18,431,574 – 18,431,688
Length 114
Max. P 0.565057
window12122

overview

Window 2

Location 18,431,574 – 18,431,688
Length 114
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 82.45
Mean single sequence MFE -25.73
Consensus MFE -18.31
Energy contribution -18.62
Covariance contribution 0.31
Combinations/Pair 1.08
Mean z-score -1.50
Structure conservation index 0.71
SVM decision value 0.06
SVM RNA-class probability 0.565057
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18431574 114 - 22224390
UUUUGAGUUGACAAUUAAGAAAUUAAGUUGCCACUUAGGCAAACUGUCAGUGUCAGUUUGACAAGCAGUCACAUAAGCGAACGCACAACUCUGCAGAUAAAGAUACGGAUAC--GC
....((((((....((((....)))).(((((.....)))))(((((...((((.....)))).))))).......((....)).))))))..............((....)--). ( -24.90)
>DroPse_CAF1 31745 92 - 1
UUUUGAGUUGACAAUUAAGAAAUUAAGUUGCCACUUAGGCAAACUGUCAGUAUCAGUUUGACAAGCAGUCACAGA------------------------AAGAUACGGAUACAAGC
.((((...(((((.((((....)))).(((((.....)))))..)))))(((((..((((((.....))))..))------------------------..))))).....)))). ( -21.40)
>DroEre_CAF1 56898 114 - 1
UUUUGAGUUGACAAUUAAGAAAUUAAGUUGCCACUUAGGCAAGCUGUCAGUGUCAGUUUGACAAGCAGUCACAUAAGCAAACGCACAGCUCUGCAGAUAAAGAUACGGAUAC--GC
..((((((.(.(((((((....)).)))))).))))))(((((((((..((((..(((((((.....))))....)))..)))))))))).)))...........((....)--). ( -25.70)
>DroYak_CAF1 36421 114 - 1
UUUUGAGUUGACAAUUAAGAAAUUAAGUUGCCACUUAGGCAGGCUGUCAGUGUCAGUUUGACAAGCAGUCACAUAGGCAAACGCACAGCUCUGCAGAUAAAGAUACGGAUAC--GC
..((((((.(.(((((((....)).)))))).))))))((((((((((..((((.((.((((.....)))).)).))))...).))))).))))...........((....)--). ( -29.80)
>DroAna_CAF1 50352 110 - 1
UUUUGAGUUGACAAUUAAGAAAUUAAGUUGCCACUUAGGCAGCCUGUCACUGUCAGUUUGACAAGCAGUCACAGAAGC------ACCGAAAUCCGGAUACGGAUACGGAUACAAGU
.((((.(((.....((((....))))((((((.....))))))((((.(((((..(.....)..))))).)))).)))------.(((..(((((....))))).)))...)))). ( -31.20)
>DroPer_CAF1 31843 92 - 1
UUUUGAGUUGACAAUUAAGAAAUUAAGUUGCCACUUAGGCAAACUGUCAGUAUCAGUUUGACAAGCAGUCACAGA------------------------AAGAUACGGAUACAAGC
.((((...(((((.((((....)))).(((((.....)))))..)))))(((((..((((((.....))))..))------------------------..))))).....)))). ( -21.40)
>consensus
UUUUGAGUUGACAAUUAAGAAAUUAAGUUGCCACUUAGGCAAACUGUCAGUGUCAGUUUGACAAGCAGUCACAGAAGC______ACAGCUCUGCAGAUAAAGAUACGGAUAC__GC
........(((((.((((....)))).(((((.....)))))..)))))(((((....((((.....))))...........(((......))).......))))).......... (-18.31 = -18.62 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:50 2006