| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,427,482 – 18,427,575 |
| Length | 93 |
| Max. P | 0.537055 |
| Location | 18,427,482 – 18,427,575 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 84.82 |
| Mean single sequence MFE | -37.14 |
| Consensus MFE | -25.70 |
| Energy contribution | -26.54 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18427482 93 - 22224390 GAAAGCCGGGUAGCCACCGGGGAUCUCACGGCUGGGAAAGGGAUGCGAAUCGAAGGAUACCCUGGUGAGCUCUUGGUGGGAUCUCCCU---GAAGC ....((((((.(((((((((((.(((((....)))))...........(((....))).)))))))).)))))))))(((....))).---..... ( -38.70) >DroSec_CAF1 50347 92 - 1 GAAAGCCGGGUAGCUACCGGGGAUCUCACGGCUGGGAAAGGGAUGCGAAUCGAGGGAUACCCUGGUGAGCUCUUGGCGGGAUCUAC-C---UAAGC ....((((((.((((((((((((((((.((..(.(.(......).).)..)).))))).))))))).))))))))))((......)-)---..... ( -39.10) >DroSim_CAF1 50600 93 - 1 AAAAGCCGGGUAGCCACCGGGGAUCUCACGGCUGGGAAAGGGAUGCGAAUCGAGGGAUACCCUGGUGAGCUCUUGGGGGGAUCUCCUC---GAAGG .....(((((.((((((((((((((((.((..(.(.(......).).)..)).))))).)))))))).))))))))((((....))))---..... ( -40.60) >DroEre_CAF1 53161 96 - 1 GGAAACCGGGCAGCCACCGGGCAUCCGAUGGCCGGGAAAGGGAUGCGAAUCGAGGGAUACCCUGGUGAGCUCUGCGGAGGAUCUCCCCCUUGAAGC ((...(((.(.((((((((((.((((.....((......))(((....)))...)))).))).)))).))).).))).((....)).))....... ( -31.90) >DroYak_CAF1 32237 93 - 1 GAAAACCGAGCAGCCACCGGGGAUCCGAUGGCUGGGAAAGGGAUGCGAAUCGCGGGAUACCCUGGUGAGCUGCAUGAAGGAUCUACCC---GCAGU .........(((((((((((((((((.....((.....))...((((...)))))))).)))))))).))))).....((......))---..... ( -35.40) >consensus GAAAGCCGGGUAGCCACCGGGGAUCUCACGGCUGGGAAAGGGAUGCGAAUCGAGGGAUACCCUGGUGAGCUCUUGGGGGGAUCUCCCC___GAAGC .....(((((.(((((((((((((((.....((......))(((....)))...)))).)))))))).)))))))).................... (-25.70 = -26.54 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:46 2006