Locus 7392

Sequence ID X_DroMel_CAF1
Location 18,426,037 – 18,426,136
Length 99
Max. P 0.959799
window12117

overview

Window 7

Location 18,426,037 – 18,426,136
Length 99
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 74.84
Mean single sequence MFE -28.06
Consensus MFE -16.32
Energy contribution -16.60
Covariance contribution 0.28
Combinations/Pair 1.33
Mean z-score -2.05
Structure conservation index 0.58
SVM decision value 1.51
SVM RNA-class probability 0.959799
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18426037 99 - 22224390
GUGCGAUUGUUUGUAUGUAU--GUAUGUUUGUAUGCUCGUCUUGUUUUUCUGGUUUAUUGGGCUAAUUCAAUAACCGACAAAACCGAAA---GCAGGCGGGCGG
((((((....))))))....--...........(((((((((.((((((..(((((.((((.............))))..)))))))))---))))))))))). ( -27.32)
>DroGri_CAF1 60971 87 - 1
-UGCAUGUGUGUGGGUGUGUGUGU---------U-GUUGUCUUGUUUUUCUGGUUUAUUGGGCUAAUUCAAUAACCAACAACAGCG------UCAGGCAAGCAG
-........(((...(((.(((((---------(-(((((..........(((((.((((((....))))))))))))))))))))------.)).))).))). ( -23.70)
>DroSec_CAF1 48922 91 - 1
GUGCGAUUGUUUGUGC--AU--G------UGUAUGCUCGUCUUGUUUUUCUGGUUUAUUGGGCUAAUUCAAUAACCGACAAAACCGAAA---GCAGGCGGGCGG
(..(((....)))..)--..--.------....(((((((((.((((((..(((((.((((.............))))..)))))))))---))))))))))). ( -28.82)
>DroSim_CAF1 49182 91 - 1
GUGCGAUUGUUUGUGC--AU--G------UGUAUGCUCGUCUUGUUUUUCUGGUUUAUUGGGCUAAUUCAAUAACCGACAAAACCGAAA---GCAGGCGGGCGG
(..(((....)))..)--..--.------....(((((((((.((((((..(((((.((((.............))))..)))))))))---))))))))))). ( -28.82)
>DroEre_CAF1 51786 93 - 1
GUGCGAGUGUGCGAGUGUGC--------GAGUGUGUUCGUCUUGUUUUUCUGGUUUAUUGGGCUAAUUCAAUAACCGACAAAACCGAAA---GCAGGCGGACGC
..(((..((..(....)..)--------)..)))((((((((.((((((..(((((.((((.............))))..)))))))))---)))))))))).. ( -27.52)
>DroPer_CAF1 25772 81 - 1
-------------UAC--AU--G------UGGGUGUUUGUCUUGUUUUUCUGGUUUAUUGGGCUAAUUCAAUAACCAACAAAAGUGAGACAGGCAUCCAGGCAG
-------------...--.(--.------(((((((((((((..(((((.(((((.((((((....)))))))))))..)))))..))))))))))))).)... ( -32.20)
>consensus
GUGCGAUUGUUUGUGC__AU__G______UGUAUGCUCGUCUUGUUUUUCUGGUUUAUUGGGCUAAUUCAAUAACCGACAAAACCGAAA___GCAGGCGGGCGG
.................................(((((((((.((.((((.(((((.((((.............))))..)))))))))...))))))))))). (-16.32 = -16.60 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:45 2006