Locus 739

Sequence ID X_DroMel_CAF1
Location 2,005,868 – 2,005,960
Length 92
Max. P 0.846637
window1197

overview

Window 7

Location 2,005,868 – 2,005,960
Length 92
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 71.78
Mean single sequence MFE -20.82
Consensus MFE -5.64
Energy contribution -6.20
Covariance contribution 0.56
Combinations/Pair 1.15
Mean z-score -1.89
Structure conservation index 0.27
SVM decision value 0.77
SVM RNA-class probability 0.846637
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2005868 92 + 22224390
UGAGUCUUAGAGAUGACACUGCGUCGUGCGGAAAUCAUCGCAACUGAAUAAA---AAAACUAUUUUUGUGAUACUAAAUAUUAUUGCAAA---------------AAGUA
......((((.(((((..((((.....))))...)))))....)))).....---.......((((((..(((........)))..))))---------------))... ( -17.20)
>DroSec_CAF1 6703 94 + 1
UGAGUCUUAGCGAUGACACUGCGUCGAGCGGAAAUCAUCGCAAGUGAAUAAAA-UAAAACUAUUUUUGUGAUACUAAAUAUUAUUGCAAA---------------AGAUA
...(((((.(((((((..((((.....))))...)))))))............-...........(((..(((........)))..))))---------------)))). ( -23.80)
>DroSim_CAF1 5608 95 + 1
UGAGUCUUAGCGAUGACACUGCGUCGAGCGAAAAUCAUCGCAAGUGCAUAAAAAAAAAACUAUUUUUGUGAUACUAAAUAUUAUUGCAAA---------------AGAUA
...(((((.(((((((...(((.....)))....))))))).((((((((((((........)))))))).))))..............)---------------)))). ( -23.50)
>DroEre_CAF1 6685 108 + 1
UGAGUGCUAGAGAUGACACUGCGUCGUGCUGAAAUAAAUGCAGGUAAAUUAAA-AAGAAAUUUGAUUUUACCAUUAAAUAUUAAUGCAGAUGGAAGUUAUAGCUCAGAU-
...(.((((..(((..((((((((..(((..........)))((((((....(-((....)))...))))))...........)))))).))...))).)))).)....- ( -23.60)
>DroYak_CAF1 6671 103 + 1
UGAGUGCUAGAGAUGACACUUCGUCGUGUUGAAAUCAGUGCAAGUGAAUAAAA-AAAA------AUUUUCCUGUUUAAUAUUAAUGCAAUUAGAAGCUAUAUCUCAGAUU
.........((((((...((((...(..(((....)))..)...((((((..(-((..------..)))..))))))...............))))...))))))..... ( -16.00)
>consensus
UGAGUCUUAGAGAUGACACUGCGUCGUGCGGAAAUCAUCGCAAGUGAAUAAAA_AAAAACUAUUUUUGUGAUACUAAAUAUUAUUGCAAA_______________AGAUA
...((..(((.((((......))))..((((......)))).......................................)))..))....................... ( -5.64 =  -6.20 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:36 2006