Locus 7389

Sequence ID X_DroMel_CAF1
Location 18,401,682 – 18,401,772
Length 90
Max. P 0.530000
window12112

overview

Window 2

Location 18,401,682 – 18,401,772
Length 90
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 82.32
Mean single sequence MFE -25.39
Consensus MFE -18.60
Energy contribution -17.58
Covariance contribution -1.02
Combinations/Pair 1.43
Mean z-score -1.35
Structure conservation index 0.73
SVM decision value -0.01
SVM RNA-class probability 0.530000
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18401682 90 - 22224390
UGCCACUUUGGGCCCGCU-CCGAUGGGCCAAAGAUUAAAAAGGGAUUCAUGUGGCCACCUUCAAUGCGAAUCUC-------------UGUGCAAAUUGCCCAUA
((((.((((((.((((..-....)))))))))).......((((((((...(((......)))....)))))))-------------)).)))........... ( -24.70)
>DroGri_CAF1 20572 99 - 1
UGCCAUUUUGGCUUUG---UAUAUUGGCCAAAGAUUAAAAAGGGAUUUCUUUGGCGAGGGU--GUGUGAAUUUUGUAGAGCUGCUGAUAGGCAAAUGGCCUAUA
.(((((((.(((((((---.......((((((((.............)))))))).(((((--......))))).)))))))(((....))))))))))..... ( -27.52)
>DroSec_CAF1 24723 90 - 1
UGCCACUUUGGGCCCGCU-CCGAUGGGCCAAAGAUUAAAAAGGGAUUCAUGCGGCCACCUUCAAUGCGAAUCUC-------------UGUGCAAAUUGCCCAUA
((((.((((((.((((..-....)))))))))).......((((((((..(((...........))))))))))-------------)).)))........... ( -24.90)
>DroSim_CAF1 22829 90 - 1
UGCCACUUUGGGCCCGCU-CCGAUGGGCCAAAGAUUAAAAAGGGAUUCAUGCGGCCACCUUCAAUGCGAAUCUC-------------UGUGCAAAUUGCCCAUA
((((.((((((.((((..-....)))))))))).......((((((((..(((...........))))))))))-------------)).)))........... ( -24.90)
>DroEre_CAF1 27467 91 - 1
UGCCACUUUGGGCCCCCUUUCGAUGGGCCAAAGAUUAAAAAGGGAUUCAUGCAGCCACCUCCAAUGCGAAUCUC-------------UGUGCAAAUUGCCCAUA
((((.((((((.(((.........))))))))).......((((((((..(((...........))))))))))-------------)).)))........... ( -24.10)
>DroYak_CAF1 6064 90 - 1
UGCCACUUUGGGCCCACU-CCGAUGGGCCGAAGAUUAAAAAGGGAUUCAUGCAGCCACCUCCAAUGCGAAUCUC-------------UGUGCAAAUUGCCCAUA
((((.((((((.((((..-....)))))))))).......((((((((..(((...........))))))))))-------------)).)))........... ( -26.20)
>consensus
UGCCACUUUGGGCCCGCU_CCGAUGGGCCAAAGAUUAAAAAGGGAUUCAUGCGGCCACCUUCAAUGCGAAUCUC_____________UGUGCAAAUUGCCCAUA
(((..((((((.((((.......))))))))))........(((((((..(((...........))))))))))................)))........... (-18.60 = -17.58 +  -1.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:41 2006