Locus 7387

Sequence ID X_DroMel_CAF1
Location 18,390,977 – 18,391,090
Length 113
Max. P 0.615332
window12109

overview

Window 9

Location 18,390,977 – 18,391,090
Length 113
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 81.64
Mean single sequence MFE -25.27
Consensus MFE -16.63
Energy contribution -18.63
Covariance contribution 2.01
Combinations/Pair 1.12
Mean z-score -1.82
Structure conservation index 0.66
SVM decision value 0.17
SVM RNA-class probability 0.615332
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18390977 113 + 22224390
UUUUGCGUAACUGCGGUUAUUGGGGUAGGGCUUUAGGCUAUUACCAACUCAAUAACCGUUGUGUUCUGG-UAUGAUUCAUACAUAUUUU----UUUUUUUUUUUG--UCUGUUUCUUAUC
.........((.(((((((((((((((((((.....))).)))))...))))))))))).)).....((-((.((..((.(((......----..........))--).))..)).)))) ( -26.19)
>DroSim_CAF1 16189 111 + 1
U-UCGCAGAACUGCGGUUAUUGGGGUAGGGCUUUAGGCUAUUACCAACUCAAUAACCGUUGUGUUCUGGCCAUGAUUCAUGCAUAUUUU----UU--UUUUUUUG--GCUGUUUCUUAUC
.-...((((((.(((((((((((((((((((.....))).)))))...)))))))))))...))))))((((.................----..--......))--))........... ( -33.11)
>DroYak_CAF1 33395 120 + 1
UUUUGUGGUAAUGCGUAUAUUGAAACAGGGUUUUUGGCUAUUACCAACCCAAUAACCGUUGUGUUCUGCCCAUGAUUCAUACAUGUUUCCUUUUUUCUUUUUUUGUUGGUGUUUCUUAUC
.....((((((((.((.....(((((...)))))..))))))))))(((((((((..((........)).((((.......)))).................))))))).))........ ( -16.50)
>consensus
UUUUGCGGAACUGCGGUUAUUGGGGUAGGGCUUUAGGCUAUUACCAACUCAAUAACCGUUGUGUUCUGGCCAUGAUUCAUACAUAUUUU____UUU_UUUUUUUG__GCUGUUUCUUAUC
.....((((((.((((((((((.((((((((.....))).)))))....))))))))))...)))))).................................................... (-16.63 = -18.63 +   2.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:39 2006