Locus 7386

Sequence ID X_DroMel_CAF1
Location 18,389,157 – 18,389,276
Length 119
Max. P 0.564666
window12108

overview

Window 8

Location 18,389,157 – 18,389,276
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 76.90
Mean single sequence MFE -21.48
Consensus MFE -13.48
Energy contribution -15.22
Covariance contribution 1.75
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.63
SVM decision value 0.06
SVM RNA-class probability 0.564666
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18389157 119 - 22224390
GGUGGCUUCGCCUUGGCCACCGCCAGGCUCUACUCCAUACCCC-CCCCCCUCUCCCACCACCUCCUUCCACAUAGCUGAGCACGAACCGUUUUAUCAGCACGUUUACACCGUAUUUACUU
((((.....((((.(((....)))))))...............-..............................(((((..(((...)))....))))).......)))).......... ( -24.60)
>DroAna_CAF1 38835 91 - 1
--------------UGUAACC-------CCUCCUCCAG-C-C----CCCCUCC--UGGUGGCUCUUUCCACACAGCUGAGCACGAACCGUUUUAUCAGCACGUUUACACCGUAUUUACUU
--------------(((((..-------........((-(-(----((.....--.)).))))...........(((((..(((...)))....)))))....)))))............ ( -16.50)
>DroSim_CAF1 15861 120 - 1
GGUGGCUCCGCCUUGGCCACCGCCAGGCUCUCCUCCACACACCUCCCCCCUCCCAAACCGCCUCCUUCCACACAGCUGAGCACGAACCGUUUUAUCAGCACGUUUACACCGUAUUUACUU
((((.....((((.(((....)))))))..............................................(((((..(((...)))....))))).......)))).......... ( -24.60)
>DroYak_CAF1 33074 111 - 1
GGUGGCUUCGCCUUGGCCACC-------UCUCCGCCAG-C-UCUCCAUCCUCCCAAACCACCUCCUUCCACACAGCUGAGCACGAACCGUUUUAUCAGCACGUUUACACCGUAUUUACUU
(((((((.......)))))))-------..........-.-.................................(((((..(((...)))....)))))(((.......)))........ ( -20.20)
>consensus
GGUGGCUUCGCCUUGGCCACC_______UCUCCUCCAG_C_CC_CCCCCCUCCCAAACCACCUCCUUCCACACAGCUGAGCACGAACCGUUUUAUCAGCACGUUUACACCGUAUUUACUU
(((((((.......))))))).....................................................(((((..(((...)))....)))))(((.......)))........ (-13.48 = -15.22 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:38 2006