Locus 7385

Sequence ID X_DroMel_CAF1
Location 18,387,794 – 18,387,905
Length 111
Max. P 0.878849
window12106 window12107

overview

Window 6

Location 18,387,794 – 18,387,905
Length 111
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 89.30
Mean single sequence MFE -26.51
Consensus MFE -21.13
Energy contribution -21.57
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -2.02
Structure conservation index 0.80
SVM decision value 0.09
SVM RNA-class probability 0.577903
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18387794 111 + 22224390
--------UCCACAACAUGUCGUGAUAUUUGAAUGUUAAUUUCAAAAAUCAUAUUCAAUUAAUUGUCAUUUUGUUGUCGUU-UCAGCCGUUUUGCUGAUUGCGUAACGAUCUGCUGCGGC
--------...((((((....((((((.((((((((..............)))))))).....))))))..))))))....-...(((((...((.(((((.....))))).)).))))) ( -27.54)
>DroSim_CAF1 14137 116 + 1
U---GUUCUCCACAACAUGUCGUGAUAUUUGAAUGUUAAUUUCAGAAAUCAUAUUCAAUUAAUUGUCAUUUUGUUGUCGUUUUCAGCCGUUUUGCUGAUUGCCUAACGAUCUGCUGCGG-
.---.....((.((.((.(((((((((...(((((.(((((...(((......)))....))))).)))))...))))((..(((((......)))))..))...))))).)).)).))- ( -25.90)
>DroYak_CAF1 31605 115 + 1
UAUGGUUCUCCACAACAUGUCGUGAUAUUUGAAUGUUCUUUUCAGAAAUCAUAUUCAAUUAAUUGUCAUUUUGUUGUCGUU-UCAGCCGUUUUGCUGAUUGCCCAACAAUCUG---CGG-
.((((((..(.((((((....((((((.(((((((((((....)))....)))))))).....))))))..)))))).)..-..))))))..(((.(((((.....))))).)---)).- ( -26.10)
>consensus
U___GUUCUCCACAACAUGUCGUGAUAUUUGAAUGUUAAUUUCAGAAAUCAUAUUCAAUUAAUUGUCAUUUUGUUGUCGUU_UCAGCCGUUUUGCUGAUUGCCUAACGAUCUGCUGCGG_
...........((((((....((((((.((((((((..............)))))))).....))))))..)))))).........((((...((.(((((.....))))).)).)))). (-21.13 = -21.57 +   0.45)

alignment

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secondary structure

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dotplot

Postscript

Window 7

Location 18,387,794 – 18,387,905
Length 111
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 89.30
Mean single sequence MFE -26.83
Consensus MFE -20.99
Energy contribution -21.77
Covariance contribution 0.78
Combinations/Pair 1.04
Mean z-score -2.94
Structure conservation index 0.78
SVM decision value 0.91
SVM RNA-class probability 0.878849
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18387794 111 - 22224390
GCCGCAGCAGAUCGUUACGCAAUCAGCAAAACGGCUGA-AACGACAACAAAAUGACAAUUAAUUGAAUAUGAUUUUUGAAAUUAACAUUCAAAUAUCACGACAUGUUGUGGA--------
.((((((((..((((..((...(((((......)))))-..))...........................(((.((((((.......)))))).)))))))..)))))))).-------- ( -29.10)
>DroSim_CAF1 14137 116 - 1
-CCGCAGCAGAUCGUUAGGCAAUCAGCAAAACGGCUGAAAACGACAACAAAAUGACAAUUAAUUGAAUAUGAUUUCUGAAAUUAACAUUCAAAUAUCACGACAUGUUGUGGAGAAC---A
-((((((((..((((.......(((((......)))))........................((((((.(((((.....)))))..)))))).....))))..)))))))).....---. ( -26.50)
>DroYak_CAF1 31605 115 - 1
-CCG---CAGAUUGUUGGGCAAUCAGCAAAACGGCUGA-AACGACAACAAAAUGACAAUUAAUUGAAUAUGAUUUCUGAAAAGAACAUUCAAAUAUCACGACAUGUUGUGGAGAACCAUA
-(((---(((..(((((.....(((((......)))))-.......................((((((.....((((....)))).))))))......)))))..))))))......... ( -24.90)
>consensus
_CCGCAGCAGAUCGUUAGGCAAUCAGCAAAACGGCUGA_AACGACAACAAAAUGACAAUUAAUUGAAUAUGAUUUCUGAAAUUAACAUUCAAAUAUCACGACAUGUUGUGGAGAAC___A
.((((((((..((((.......(((((......)))))................................(((...((((.......))))...)))))))..))))))))......... (-20.99 = -21.77 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:37 2006