Locus 7384

Sequence ID X_DroMel_CAF1
Location 18,386,998 – 18,387,146
Length 148
Max. P 0.695493
window12104 window12105

overview

Window 4

Location 18,386,998 – 18,387,106
Length 108
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 91.22
Mean single sequence MFE -32.08
Consensus MFE -25.11
Energy contribution -25.11
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.28
Structure conservation index 0.78
SVM decision value 0.15
SVM RNA-class probability 0.608899
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18386998 108 - 22224390
AGGUCUUGAGGGUAUCGAGAAUGCAACAUUCAAUGUUGCGGCAACAUGUUGCUUAUGGGCUUAAUUAGUAGCUGUUGUUGCGAUUCCCGUUUCUUUCCGUUAAUUAAA
.((......(((.((((.....(((((((...)))))))(((((((.((((((.((.......)).))))))))))))).)))).)))........)).......... ( -31.14)
>DroSim_CAF1 13288 103 - 1
AGGUCUUGAGGGUAUCGAAAAUGC-----CCAAUGUUGCGGCAACAUGUUGCUUAUGGGCUUAAUUAGUAGCUGUUGUUGCGAUUCCCGUUUCUUUCCGUUAAUUAAA
.((....((((((((.....))))-----))...((((((((((((.((((((.((.......)).)))))))))))))))))).......))...)).......... ( -30.70)
>DroYak_CAF1 30887 103 - 1
AGGGCUUGAGGGUAUCUAAGCUGC-----CCAGUGUUGCGGCAACAUGUUGCUUAUGGGUUUAAUUAGUAGCUGUUGUUGCGAUUCCCGUUUCUUGCCGUUAAUUAAA
..(((..(((((((.......)))-----)).(.((((((((((((.((((((.((.......)).)))))))))))))))))).).....))..))).......... ( -34.40)
>consensus
AGGUCUUGAGGGUAUCGAAAAUGC_____CCAAUGUUGCGGCAACAUGUUGCUUAUGGGCUUAAUUAGUAGCUGUUGUUGCGAUUCCCGUUUCUUUCCGUUAAUUAAA
.((......(((.(((.....((.......)).....(((((((((.((((((.((.......)).)))))))))))))))))).)))........)).......... (-25.11 = -25.11 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 18,387,038 – 18,387,146
Length 108
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 81.01
Mean single sequence MFE -28.07
Consensus MFE -16.79
Energy contribution -16.80
Covariance contribution 0.01
Combinations/Pair 1.17
Mean z-score -2.20
Structure conservation index 0.60
SVM decision value 0.34
SVM RNA-class probability 0.695493
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18387038 108 - 22224390
AGUAACAUAGUAACAUAGAUAAAUCUAUAUUUCGACCUUCAGGUCUUGAGGGUAUCGAGAAUGCAACAUUCAAUGUUGCGGCAACAUGUUGCUUAUGGGCUUAAUUAG
.....(((((((((((.............(((((((((((((...)))))))..))))))..(((((((...)))))))(....)))))))).))))........... ( -29.80)
>DroSim_CAF1 13328 100 - 1
---AGCAUAGUAACAUAGAUAAAUCUAUAUUUCGACCUUCAGGUCUUGAGGGUAUCGAAAAUGC-----CCAAUGUUGCGGCAACAUGUUGCUUAUGGGCUUAAUUAG
---...........(((((....))))).(((((((((((((...)))))))..))))))..((-----(((.....(((((.....)))))...)))))........ ( -27.30)
>DroYak_CAF1 30927 96 - 1
---GGUAU----AUAUCAAUAUAUCAAUAUUGUGACCUUCAGGGCUUGAGGGUAUCUAAGCUGC-----CCAGUGUUGCGGCAACAUGUUGCUUAUGGGUUUAAUUAG
---(((((----((....))))))).........((((((((...))))))))..((((...((-----(((.....(((((.....)))))...)))))....)))) ( -27.10)
>consensus
___AGCAUAGUAACAUAGAUAAAUCUAUAUUUCGACCUUCAGGUCUUGAGGGUAUCGAAAAUGC_____CCAAUGUUGCGGCAACAUGUUGCUUAUGGGCUUAAUUAG
.....((((((((((((((((......)))))..((((((((...))))))))...................)))))))(((((....)))))))))........... (-16.79 = -16.80 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:35 2006