| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,383,825 – 18,383,919 |
| Length | 94 |
| Max. P | 0.999976 |
| Location | 18,383,825 – 18,383,919 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.16 |
| Mean single sequence MFE | -20.43 |
| Consensus MFE | -20.06 |
| Energy contribution | -19.40 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.98 |
| SVM decision value | 5.15 |
| SVM RNA-class probability | 0.999976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18383825 94 - 22224390 CUUUAAGUUGUCAUGUUUUGGACAGUUUGUUUGCUAAAUUGUUUUGUAACAUGAUUUAGACAUAUUAUGUGUGUGCUGUAUCGUCCUC--------------------------AUCCCC .........((((((((..((((((((((.....))))))))))...)))))))).(((.(((((.....))))))))..........--------------------------...... ( -19.40) >DroAna_CAF1 33150 82 - 1 CUUUAAGUUGUCAUGUUUCAGACAGUUUGUUUGCUAAAUUGUUUUGUAACAUGAUUUGGACACAUUAUGUGUGUGCUGUCCC-------------------------------------- .........((((((((.(((((((((((.....))))))).)))).))))))))..((((((((.......))).))))).-------------------------------------- ( -22.50) >DroYak_CAF1 27591 120 - 1 CUUUAAGUUGUCAUGUUUUGGACAGUUUGUUUGCUAAAUUGUUUUGUAACAUGAUUUAGACAUAUUAUGUGUGUGCUGUAUCCCCUUCCCCUUCCCAUUCCCCUUCCUAUUCCCCUUCCC .........((((((((..((((((((((.....))))))))))...)))))))).(((.(((((.....)))))))).......................................... ( -19.40) >consensus CUUUAAGUUGUCAUGUUUUGGACAGUUUGUUUGCUAAAUUGUUUUGUAACAUGAUUUAGACAUAUUAUGUGUGUGCUGUAUC__C_UC___________________________U_CCC .........((((((((..((((((((((.....))))))))))...)))))))).(((.(((((.....)))))))).......................................... (-20.06 = -19.40 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:33 2006