Locus 7382

Sequence ID X_DroMel_CAF1
Location 18,382,873 – 18,382,969
Length 96
Max. P 0.842744
window12102

overview

Window 2

Location 18,382,873 – 18,382,969
Length 96
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 82.14
Mean single sequence MFE -26.50
Consensus MFE -23.80
Energy contribution -23.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.34
Structure conservation index 0.90
SVM decision value 0.76
SVM RNA-class probability 0.842744
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18382873 96 - 22224390
UCGUCGUCUGCUUGACAUUUUCGUUUGUUGCACUGCCAAAUGCGAAAAAGUGGCAAUUAAUUUUGUCAGUGUUGCAUUUAAUGGGC-CUGCCUCUUC-----------------------
..((((......))))..........(..(((..(((((((((((...(.((((((......)))))).).))))))))....)))-.)))..)...----------------------- ( -24.20)
>DroAna_CAF1 32467 118 - 1
--UUCGUCUGCUUGACAUUUUCGUUUGUUGCACUGCCAAAUGCGAAAAAGUGGCAAUUAAUUUUGUCAGUGUUGCAUUUAAUGGGCCCUGCCUCAAGCCCCAUGCCUCAUGCCUCAUGCC
--.......((.(((.......(((((..(((..(((((((((((...(.((((((......)))))).).))))))))....)))..)))..)))))..((((...))))..))).)). ( -31.10)
>DroYak_CAF1 26645 96 - 1
UCGUCGUCUGCUUGACAUUUUCGUUUGUUGCACUGCCAAAUGCGAAAAAGUGGCAAUUAAUUUUGUCAGUGUUGCAUUUAAUGGGC-CUGCCUCUUC-----------------------
..((((......))))..........(..(((..(((((((((((...(.((((((......)))))).).))))))))....)))-.)))..)...----------------------- ( -24.20)
>consensus
UCGUCGUCUGCUUGACAUUUUCGUUUGUUGCACUGCCAAAUGCGAAAAAGUGGCAAUUAAUUUUGUCAGUGUUGCAUUUAAUGGGC_CUGCCUCUUC_______________________
.....(((.....)))..........(..(((..(((((((((((...(.((((((......)))))).).))))))))....)))..)))..).......................... (-23.80 = -23.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:33 2006