| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,380,450 – 18,380,548 |
| Length | 98 |
| Max. P | 0.763265 |
| Location | 18,380,450 – 18,380,548 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.43 |
| Mean single sequence MFE | -12.29 |
| Consensus MFE | -11.75 |
| Energy contribution | -11.31 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.10 |
| Mean z-score | -0.54 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.763265 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18380450 98 - 22224390 UAAAACCAAUGCAA---AGCAAAUAAAAACGACAAAUAAAUCACA------------------ACAACA-GCGGAUCGUGAUUGUCAAGAAAAUUGAAAUCUCAACUAAUUAGUUUGUUA ..............---(((((((......((((.....(((((.------------------......-.......))))))))).......((((....)))).......))))))). ( -11.54) >DroAna_CAF1 30149 120 - 1 UAAAACAAAUGCAAAAAAGCAAAUAAAAACGACGAAUAAAUCACAGAACAGAACAGAAACAGCACAACGGGCGAAUCGUGAUUGUCAAGAAAAUUGAAAUCUCAACUAAUUAGUUUGUUA .........(((......))).........(((((((.((((((.((...(..(..............)..)...)))))))).((((.....))))...............))))))). ( -13.64) >DroYak_CAF1 24265 98 - 1 UAAAACCAAUGCAA---AGCAAAUAUAAACGACGAAUAAAUCACA------------------ACAACA-GCGGAUCGUGGUUGUCAAGAAAAUUGAAAUCUCAACUAAUUAGUUUGUUA .........(((..---.))).........(((((((...((...------------------(((((.-(((...))).)))))...))...((((....)))).......))))))). ( -11.70) >consensus UAAAACCAAUGCAA___AGCAAAUAAAAACGACGAAUAAAUCACA__________________ACAACA_GCGGAUCGUGAUUGUCAAGAAAAUUGAAAUCUCAACUAAUUAGUUUGUUA .........(((......))).........(((((((.((((((.................................)))))).((((.....))))...............))))))). (-11.75 = -11.31 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:32 2006