Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,005,033 – 2,005,140 |
Length | 107 |
Max. P | 0.816236 |
Location | 2,005,033 – 2,005,140 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 88.14 |
Mean single sequence MFE | -25.04 |
Consensus MFE | -18.09 |
Energy contribution | -18.13 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.12 |
Mean z-score | -2.17 |
Structure conservation index | 0.72 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.816236 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2005033 107 + 22224390 CUGAUAAGCGAAAAAGGGGCAAAAUGGUUACUUUCGAUUUCUAAUAGGAUGGUAAUUGAGUUUUC-C----AUUCCCCAUAUUUGCAAAAUCAGAUAUAUAUGAUAAAAUCU (((((..(((((...((((...(((((.....(((((((.(((......))).)))))))....)-)----)))))))...)))))...))))).................. ( -26.10) >DroSec_CAF1 5869 106 + 1 CUGAUAAGCGAA-AAGGGGCAAAAUGGUUACUUUCGAUUUCUAAUAGGAUGGUAAUUGAGUUUUC-C----AUUCCCCAUAUUUGCAAAAUCUGAUAUAUAUGAUAAAACCU .......(((((-..((((...(((((.....(((((((.(((......))).)))))))....)-)----)))))))...))))).......................... ( -21.90) >DroSim_CAF1 4774 106 + 1 CUGAUAAGCGAA-AAGGGGCAAAAUGGUUACUUUCGAUUUCUAAUAAGAUGGUAAUUGAGUUUUC-C----AUUCCCCAUAUUUGCAAAAUCAGAUAUAUAUGAUAAAAUCU (((((..(((((-..((((...(((((.....(((((((.(((......))).)))))))....)-)----)))))))...)))))...))))).................. ( -25.80) >DroEre_CAF1 5841 110 + 1 CUGAUAAGUAAA-AUGGGGCAAUAUGGCGACUUUCGAUUUCUAAUAAGAUGGUAAUUGAGUCUUC-CCACAGUUCCCCAUGUUUACAAAAUCAGAUAAAUAUGAUUAAAUUU (((((..(((((-((((((.(((.(((.((..(((((((.(((......))).)))))))...))-)))..))))))))).)))))...))))).................. ( -27.50) >DroYak_CAF1 5874 111 + 1 CUGAUAAGCGAA-AGGGGGCAAAAUGGUGACUUUCGAUUUCUAAUAAGAUGGCAAUGGAGUCUCCCCCACAAUGUCCCAUUUUUACAAAAUCAGAUAUAUAUGAUAAAAUCU (((((...(...-.)((((((...(((.((..(((.(((.(((......))).))).)))..))..)))...))))))...........))))).................. ( -23.90) >consensus CUGAUAAGCGAA_AAGGGGCAAAAUGGUUACUUUCGAUUUCUAAUAAGAUGGUAAUUGAGUUUUC_C____AUUCCCCAUAUUUGCAAAAUCAGAUAUAUAUGAUAAAAUCU (((((..(((((...((((.............(((((((.(((......))).)))))))..............))))...)))))...))))).................. (-18.09 = -18.13 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:36 2006