Locus 7378

Sequence ID X_DroMel_CAF1
Location 18,373,286 – 18,373,393
Length 107
Max. P 0.941735
window12094

overview

Window 4

Location 18,373,286 – 18,373,393
Length 107
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 80.66
Mean single sequence MFE -25.07
Consensus MFE -16.31
Energy contribution -16.87
Covariance contribution 0.56
Combinations/Pair 1.13
Mean z-score -2.45
Structure conservation index 0.65
SVM decision value 1.32
SVM RNA-class probability 0.941735
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18373286 107 - 22224390
AGGGGCAAGAUCGGAUCCCCAAGAUCCCCACCAUCAUCAUUAUCGUCCUCAUCAUCGGGUUGCCGUGUUCCUCAGCCCGCAGCCCGC-----AGCCCUACCAUCUAUCCCUU
.(((((......(((((.....)))))............................((((((((.(.((......))).)))))))).-----.))))).............. ( -30.50)
>DroSec_CAF1 17990 100 - 1
AGGGGCAAGAUCGGAUCCCCAAGAUCCCCACCACCAUCAUUAUCGUCCUCAUCAUCGGGUUGCCGUGUUCCUCAGCCCGCAGCUC------------CCCCCUCUAUCCCUU
(((((..((...(((((.....)))))............................(((((((..(....)..)))))))...)).------------.)))))......... ( -23.90)
>DroYak_CAF1 16887 104 - 1
AGGGGCAAGAUCGGAUCCCCAAGAUCCCCACCAUCAUCAUUAUCGUCCUCAUCAUCGGG--------UUCCUCAGCCCUCAGUUCUCCCCAAUCCCUUACCCUUACUCCCUU
.((((..(((.((((((.....))))).............................(((--------(......))))...).)))))))...................... ( -20.80)
>consensus
AGGGGCAAGAUCGGAUCCCCAAGAUCCCCACCAUCAUCAUUAUCGUCCUCAUCAUCGGGUUGCCGUGUUCCUCAGCCCGCAGCUC_C_______CC_UACCCUCUAUCCCUU
..((((......(((((.....))))).............................((((((..........))))))...))))........................... (-16.31 = -16.87 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:26 2006