| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,371,763 – 18,371,875 |
| Length | 112 |
| Max. P | 0.548694 |
| Location | 18,371,763 – 18,371,875 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 93.51 |
| Mean single sequence MFE | -39.58 |
| Consensus MFE | -28.90 |
| Energy contribution | -29.28 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.548694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18371763 112 + 22224390 UUGCCGUGUUCCCUGACCAUUCCAUGGUGUUCUGUCCCGCGGACCCCGCAUUCUGGUAAUCCUUUAAUUUAUGACACUCUGGCACUCAACUAGAACGGACAGCAGGGAACCG ....((.(((((((((((((...)))))...((((((.((((...)))).(((((((...((..................))......))))))).)))))))))))))))) ( -37.37) >DroSec_CAF1 16480 109 + 1 GUGCCGUGUUCCCUGACCAUUCCGUGGUGUUCUGCCCCGCGGACCCCGCGUUCUGGUAAUCCUUUAAUUUAUGACACUCUGGCACUCAACUAGAACGGAC---AGGGAACCG ....((.((((((((.((..(((((((.(.....).)))))))......((((((((...((..................))......)))))))))).)---))))))))) ( -38.47) >DroEre_CAF1 15662 109 + 1 UUGCCGUGUUCCCUGACCAUUCCGUGGUGUUCUUCCCCGCGGACCCCGUGUUGUGGUAAUCCUUUAAUUUAUGACACUCUGGCACUCAACUAGAACGGAC---AGGGAGCCG ....((.((((((((.((..(((((((.(.....).)))))))....((((..(((............)))..))))(((((.......)))))..)).)---))))))))) ( -38.50) >DroYak_CAF1 15361 109 + 1 UUGCCGUGUUCCCUGGCCAUUCCGUGGUGCUCUGUCCCGCGGAGCCCGCGUUCUGGUAAUCCUUUAAUUUAUGACACUCUGGCACUCAACUAGAACGGAC---AGGGAACCG ....((.((((((((.((.....((((.((((((.....))))))))))((((((((...((..................))......)))))))))).)---))))))))) ( -43.97) >consensus UUGCCGUGUUCCCUGACCAUUCCGUGGUGUUCUGCCCCGCGGACCCCGCGUUCUGGUAAUCCUUUAAUUUAUGACACUCUGGCACUCAACUAGAACGGAC___AGGGAACCG ....((.(((((((......(((((.(((((......(((((...)))))....((....))..........)))))(((((.......))))))))))....))))))))) (-28.90 = -29.28 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:21 2006