| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,370,890 – 18,371,002 |
| Length | 112 |
| Max. P | 0.902978 |
| Location | 18,370,890 – 18,371,002 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.59 |
| Mean single sequence MFE | -24.61 |
| Consensus MFE | -22.07 |
| Energy contribution | -22.82 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.902978 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18370890 112 - 22224390 --------CGCUUACAUUUGCCACAUUUGUAUGAAUAAUUUAAUUAUUGUUUAAAUGUUAAUUAAUGCAACGUGAGCGGCGACUGCUCUACACUGCACUUCUCCAGUCUCCAUUCCGCCA --------.((((((..((((.((....)).((((((((......)))))))).............)))).))))))((((...((........))(((.....)))........)))). ( -22.20) >DroSec_CAF1 15545 120 - 1 UCUUCUGCCGCUUACAUUUGCCACAUUUGUAUGAAUAAUUUAAUUAUUGUUUAAAUGUUAAUUAAUGCAACGUGAGCGGCGACUGCUCUGCACUGCACUUCUCCAGUCUCCAUUCCGCCA ......(((((((((..((((.((....)).((((((((......)))))))).............)))).)))))))))(((((...(((...)))......)))))............ ( -28.40) >DroEre_CAF1 14690 115 - 1 UCUUCUGCCGCUUACAUUUGCCACAUUUGUAUGAAUAAUUUAAUUAUUGUUUAAAUGUUAAUUAAUGCAACGUGAACGGCGACUG-----CACUGCACUUCUCCAGUCUCCAUUCCGACA ......((((.((((..((((.((....)).((((((((......)))))))).............)))).)))).))))(((((-----.............)))))............ ( -20.52) >DroYak_CAF1 14508 115 - 1 UCUUCGGCCGCUUACAUUUGCCACAUUUGUAUGAAUAAUUUAAUUAUUGUUUAAAUGUUAAUUAAUGCAACGUGAGCGGCGACUG-----CACUGCACUUCUCCAGUCUCCAUUCCGCCA .....(((.((((((..((((.((....)).((((((((......)))))))).............)))).))))))((.(((((-----.............))))).)).....))). ( -27.32) >consensus UCUUCUGCCGCUUACAUUUGCCACAUUUGUAUGAAUAAUUUAAUUAUUGUUUAAAUGUUAAUUAAUGCAACGUGAGCGGCGACUG_____CACUGCACUUCUCCAGUCUCCAUUCCGCCA ......(((((((((..((((.((....)).((((((((......)))))))).............)))).)))))))))(((((..................)))))............ (-22.07 = -22.82 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:20 2006