Locus 7373

Sequence ID X_DroMel_CAF1
Location 18,370,542 – 18,370,648
Length 106
Max. P 0.588826
window12086

overview

Window 6

Location 18,370,542 – 18,370,648
Length 106
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 79.21
Mean single sequence MFE -28.43
Consensus MFE -19.76
Energy contribution -20.07
Covariance contribution 0.31
Combinations/Pair 1.05
Mean z-score -1.59
Structure conservation index 0.70
SVM decision value 0.11
SVM RNA-class probability 0.588826
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18370542 106 + 22224390
ACUCU-------AGCUAG--GCACUCCUUUGAGAGGCCUUGGAUGUUACCAUGGCCACCCGACCGCCG--CCACCAGCCUCCCCUGAUCCCAGUUGCACCGUCUAAUUGGGAAUUUC
.....-------.(((.(--((.(((....))).((((.(((......))).))))...........)--))...))).........(((((((((.......)))))))))..... ( -30.30)
>DroSec_CAF1 15180 106 + 1
ACUAU-------AGCUAG--GCACUCCUUUGAAAGGCCUUGGAUGUUACCAUGGCCACCCGCCCGCCU--CCAGCAGCCUCCCCUGAUCCCAGUUGCACCGUCUAAUUGGGAAUUUC
.....-------.(((((--((.(......)...((((.(((......))).))))........))))--..)))............(((((((((.......)))))))))..... ( -29.80)
>DroEre_CAF1 14315 105 + 1
ACUGCAGCUAUACUCUGCUAUAGCUCCUUUGAAAGGCCUUGGACGCUACCAUAGCCAC------------CUAUCCGCCUCCCCUGAUCCCAGUUGCACCGUCUAAUUGGGAAUUUC
...(((((((((......))))))).........(((..(((......)))..)))..------------......)).........(((((((((.......)))))))))..... ( -26.40)
>DroYak_CAF1 14138 115 + 1
ACUAUUACUACUAGCUGG--GCACUCCUUUGAAAGGCCUUGGAUGCUACCAUAGCCACCAGCCCACCAGCCCACCCGCCUCCCCUGAUCCCAGUUGCAUCGUCUAAUUGGGAAUUUC
.............(.(((--((.(......)...(((..(((......)))..)))....))))).)....................(((((((((.......)))))))))..... ( -27.20)
>consensus
ACUAU_______AGCUAG__GCACUCCUUUGAAAGGCCUUGGAUGCUACCAUAGCCACCCGCCCGCC___CCACCAGCCUCCCCUGAUCCCAGUUGCACCGUCUAAUUGGGAAUUUC
..............................((((((((.(((......))).))))...............................(((((((((.......))))))))).)))) (-19.76 = -20.07 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:19 2006