Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,997,919 – 1,998,079 |
Length | 160 |
Max. P | 0.600365 |
Location | 1,997,919 – 1,998,039 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.08 |
Mean single sequence MFE | -29.29 |
Consensus MFE | -22.40 |
Energy contribution | -22.57 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.17 |
Mean z-score | -1.56 |
Structure conservation index | 0.76 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576970 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1997919 120 + 22224390 CCUUUAGUAACUGCAGUGACACAUCUGAUAUUCGUUUCACAACCGGUUUAUAUAUGUAUGCAGAUGCUGAUAUUGUUUUCGCGCUUAUCAGCUACCUGUUAACCCAGUGUUUCUGUUUGU .........((.((((.(((((...(((........))).....((((...........((((..(((((((.(((....)))..)))))))...)))).))))..))))).))))..)) ( -25.70) >DroSec_CAF1 29921 120 + 1 CCUUUAGUAACUGCAGUGACACAUUUGCCAUUCGUUUCACAACCGGUUUACAUUCGUAUGCAGAUGCUGAUAUUGUUUUCGCGCUUAUCAGCUACCUGUUAACCCAGUGUUGCUGUUUGU .........((.((((..((((...........(((....))).(((((((....))).((((..(((((((.(((....)))..)))))))...)))).))))..))))..))))..)) ( -28.40) >DroSim_CAF1 24128 120 + 1 CCUUUAGUAACUGCAGUGACACAUCUGUCAUUCGUUUCACAACCGGUUUACAUUCGUAUGCAGAUGCUGAUAUUGUUUUCGCGCUUAUCAGCUACCUGUUAACCCAGUGUUGCUGUUUGU .........((.((((..(((((((((.(((.((....................)).))))))))(((((((.(((....)))..)))))))..............))))..))))..)) ( -30.15) >DroEre_CAF1 19703 120 + 1 CUUUUAGUAACUGCAGUGACACAUCUGCCAUUCGUUUUCCAACCGGUUCACAUUCGUAUGCAGAUGCUGAUAUUGUUUUCGCGCUUAUCAGCUACCUGUUAGCCCAGUGUGGCUGUUUGU ......(..(..((((((.(((((((((.((.((....((....))........)).))))))))).)).))))))..)..)((....((((((((((......))).)))))))...)) ( -31.80) >DroYak_CAF1 30248 113 + 1 CUUUAAUUAACUAGUGGAAAGCUUCUGCCAUUCGUUUCGAAACCGGCUCGCAUUUGAAUGCAGAUGCUGAUAUUA-------GCUUAUCAGCUACCUGUUAACCCAGUGUCGCUGUUUGU ..........((((((...(((.(((((.(((((..((((.......))).)..)))))))))).)))..)))))-------).....((((.(((((......))).)).))))..... ( -30.40) >consensus CCUUUAGUAACUGCAGUGACACAUCUGCCAUUCGUUUCACAACCGGUUUACAUUCGUAUGCAGAUGCUGAUAUUGUUUUCGCGCUUAUCAGCUACCUGUUAACCCAGUGUUGCUGUUUGU .........((.((((..(((((((((.(((.((....................)).))))))))(((((((.(((....)))..)))))))..............))))..))))..)) (-22.40 = -22.57 + 0.17)
Location | 1,997,959 – 1,998,079 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.44 |
Mean single sequence MFE | -31.11 |
Consensus MFE | -22.76 |
Energy contribution | -23.68 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.07 |
Mean z-score | -1.71 |
Structure conservation index | 0.73 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.600365 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1997959 120 - 22224390 GGGGGCGGGUGCGAACGCGUGUUGUCUGUAAACAAGCGAGACAAACAGAAACACUGGGUUAACAGGUAGCUGAUAAGCGCGAAAACAAUAUCAGCAUCUGCAUACAUAUAUAAACCGGUU (...((((((((....((((.((((((((......)).)))))).(((..((.(((......)))))..)))....))))((........)).))))))))...)............... ( -33.90) >DroSec_CAF1 29961 115 - 1 GG-----GGUGCUAACGCGUGUUGUCUGUAAACAAGCAAGACAAACAGCAACACUGGGUUAACAGGUAGCUGAUAAGCGCGAAAACAAUAUCAGCAUCUGCAUACGAAUGUAAACCGGUU ((-----((((((...((((.((((((((......)).)))))).((((.((.(((......))))).))))....))))((........))))))))(((((....)))))..)).... ( -34.20) >DroSim_CAF1 24168 114 - 1 GG-----GGUGCGAACGCGUG-UGUCUGUAAACAAGCAAGACAAACAGCAACACUGGGUUAACAGGUAGCUGAUAAGCGCGAAAACAAUAUCAGCAUCUGCAUACGAAUGUAAACCGGUU ((-----..((((..(((((.-(((((((......)).)))))..((((.((.(((......))))).))))....)))))............((....)).......))))..)).... ( -32.90) >DroEre_CAF1 19743 113 - 1 -------GGUGCGAACGCGUGUUGUCUAUAAACAAGCAAAACAAACAGCCACACUGGGCUAACAGGUAGCUGAUAAGCGCGAAAACAAUAUCAGCAUCUGCAUACGAAUGUGAACCGGUU -------(((.((....(((((........................((((......))))..(((((.(((((((.............)))))))))))).)))))....)).))).... ( -26.52) >DroYak_CAF1 30288 106 - 1 -------GGUGCGAACGCGUGUUGUCUAUAAACAAGCAAAACAAACAGCGACACUGGGUUAACAGGUAGCUGAUAAGC-------UAAUAUCAGCAUCUGCAUUCAAAUGCGAGCCGGUU -------(((.....((((((((((......................)))))))(((((...(((((.(((((((...-------...)))))))))))).)))))...))).))).... ( -28.05) >consensus GG_____GGUGCGAACGCGUGUUGUCUGUAAACAAGCAAGACAAACAGCAACACUGGGUUAACAGGUAGCUGAUAAGCGCGAAAACAAUAUCAGCAUCUGCAUACGAAUGUAAACCGGUU .......(((...(((.(((((((.((((...............)))))))))).).)))..(((((.(((((((.............)))))))))))).............))).... (-22.76 = -23.68 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:35 2006