| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,366,916 – 18,367,058 |
| Length | 142 |
| Max. P | 0.689537 |
| Location | 18,366,916 – 18,367,018 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.05 |
| Mean single sequence MFE | -20.72 |
| Consensus MFE | -11.54 |
| Energy contribution | -10.97 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.689537 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18366916 102 + 22224390 ACUGCC------CCCGCCCCCCUCACCACUCGAUUGCUCGCAUGUUUAAUUAUAAUUAAAAAGCACAGCAC----------AACAUCUCCAGCAGCAUCU--CCCUUGCCAAGAGAGCAU ..(((.------......................((((.((...((((((....))))))..))..)))).----------....((((..((((.....--...))))...))))))). ( -14.10) >DroSec_CAF1 11529 108 + 1 ACUGCCACCACCCCCGCUCCACUCUUCACUCGAUUGCUCGCAUGUUUAAUUAUAAUUAAAAAGCACAGCAC----------AGCAUCUCCAGCAGCAUCU--CCCCCGCCAAGGGAGCAU ...............(((((..............((((.((...((((((....))))))..((.......----------.)).......))))))...--...........))))).. ( -18.79) >DroEre_CAF1 10742 112 + 1 GCCACC------CACUGCUCCCCAUCCAUCCAAAUGCUCGCAUGUUUAAUUAUAAUUAAAAAGCACAGCACAGCAGAGCAGAGCAUCUCCAGGAGCAUCU--CCCCCACCAAGGGAGCAU ......------...(((((((...........((((((((...((((((....))))))..))...((........)).)))))).....((((...))--))........))))))). ( -29.10) >DroYak_CAF1 10599 99 + 1 ACCACC------CACU----------CACUCGAAUGCUCGCAUGUUUAAUUAUAAUUAAAAAGCAC-----AGCAGAGCAGAGCAUCUCCAGCAGCAUCUCUCUCCCGCCAAGGGAGCAU ......------....----------..((.((((((((((...((((((....))))))..))..-----.((...)).)))))).)).))..........(((((.....)))))... ( -20.90) >consensus ACCACC______CACGCCCCCCUCUCCACUCGAAUGCUCGCAUGUUUAAUUAUAAUUAAAAAGCACAGCAC__________AGCAUCUCCAGCAGCAUCU__CCCCCGCCAAGGGAGCAU ..................................(((((((...((((((....))))))..)).........................................((.....))))))). (-11.54 = -10.97 + -0.56)
| Location | 18,366,950 – 18,367,058 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.35 |
| Mean single sequence MFE | -20.85 |
| Consensus MFE | -15.09 |
| Energy contribution | -14.78 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.505841 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18366950 108 + 22224390 CAUGUUUAAUUAUAAUUAAAAAGCACAGCAC----------AACAUCUCCAGCAGCAUCU--CCCUUGCCAAGAGAGCAUCCUUCAGGCUAACCUGAUCCAUAAACAUUAAAAUGGUUAA .(((((((.......................----------....((((..((((.....--...))))...)))).......(((((....)))))....)))))))............ ( -16.00) >DroSec_CAF1 11569 108 + 1 CAUGUUUAAUUAUAAUUAAAAAGCACAGCAC----------AGCAUCUCCAGCAGCAUCU--CCCCCGCCAAGGGAGCAUCCUUCAGGCUAACCUGAUCCAUAAACAUUAAAAUGGUUAA .(((((((..............((...((..----------.((.......)).))....--..(((.....))).)).....(((((....)))))....)))))))............ ( -18.90) >DroEre_CAF1 10776 118 + 1 CAUGUUUAAUUAUAAUUAAAAAGCACAGCACAGCAGAGCAGAGCAUCUCCAGGAGCAUCU--CCCCCACCAAGGGAGCAUCCUUCAGGCUAACCUGAUCCAUAAACAUUAAAAUGGUUAA .(((((((..............((.(.((........)).).))......((((....((--(((.......)))))..))))(((((....)))))....)))))))............ ( -24.10) >DroYak_CAF1 10623 115 + 1 CAUGUUUAAUUAUAAUUAAAAAGCAC-----AGCAGAGCAGAGCAUCUCCAGCAGCAUCUCUCUCCCGCCAAGGGAGCAUCCUUCAGGCUAACCUGAUCCAUAAACAUUAAAAUGGUUAA .(((((((..................-----.((.(((.(((((..........)).))))))((((.....)))))).....(((((....)))))....)))))))............ ( -24.40) >consensus CAUGUUUAAUUAUAAUUAAAAAGCACAGCAC__________AGCAUCUCCAGCAGCAUCU__CCCCCGCCAAGGGAGCAUCCUUCAGGCUAACCUGAUCCAUAAACAUUAAAAUGGUUAA .(((((((..............((..................((..........))........(((.....))).)).....(((((....)))))....)))))))............ (-15.09 = -14.78 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:11 2006