| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,365,145 – 18,365,235 |
| Length | 90 |
| Max. P | 0.658490 |
| Location | 18,365,145 – 18,365,235 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 96.89 |
| Mean single sequence MFE | -18.66 |
| Consensus MFE | -15.30 |
| Energy contribution | -15.30 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658490 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18365145 90 + 22224390 CAUUAUCAAUAUGUUGACAACAAGCGAGCAAUAAUAAUUGCAAUAACAAUUUGCCGCGAACCCAAGAAGCGUGCGAAAUGUGCCAAAAGG .....((((....))))......((..(((((....)))))....(((.((((((((...........))).))))).)))))....... ( -17.50) >DroSec_CAF1 9796 90 + 1 CAUUAUCAAUAUGUUGACAACAAGCCAGCAAUAAUAAUUGCAAUAACAAUUUGCCGCGAACCCAAGAAGCGUGCGAAAUGUGCCAAAAGG .....((((....)))).......((.(((((....)))))....(((.((((((((...........))).))))).))).......)) ( -16.80) >DroSim_CAF1 10656 90 + 1 CAUUAUCAAUAUGUUGACAACAAGGCAGCAAUAAUAAUUGCAAUAACAAUUUGCCGCGAACCCAAGAAGCGUGCGAAAUGUGCCAAAAGG .....((((....))))......(((.(((((....)))))....(((.((((((((...........))).))))).))))))...... ( -21.70) >DroEre_CAF1 8926 90 + 1 CAUUACCAAUAUGUUGACAACAAGCCAGCAAUAAUAAUUGCAAUAACAAUUUGCCGCGAACCCAAGAAGCGUGCGAAAUGUGUUCAAAGG .............((((..........(((((....)))))....(((.((((((((...........))).))))).)))..))))... ( -16.80) >DroYak_CAF1 8918 90 + 1 CAUUAUCAAUAUGUUGACAACAAGCGAGCAAUAAUAAUUGCAAUAACAAUUUGCCGCGAACCCAAGAAGCGUGCGAAAUGUGUCAAAAGG .............(((((.........(((((....)))))....(((.((((((((...........))).))))).)))))))).... ( -20.50) >consensus CAUUAUCAAUAUGUUGACAACAAGCCAGCAAUAAUAAUUGCAAUAACAAUUUGCCGCGAACCCAAGAAGCGUGCGAAAUGUGCCAAAAGG ...........................(((((....)))))....(((.((((((((...........))).))))).)))......... (-15.30 = -15.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:06 2006