Locus 7366

Sequence ID X_DroMel_CAF1
Location 18,364,848 – 18,364,952
Length 104
Max. P 0.949399
window12068 window12069

overview

Window 8

Location 18,364,848 – 18,364,952
Length 104
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 95.09
Mean single sequence MFE -38.37
Consensus MFE -34.97
Energy contribution -35.63
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.49
Structure conservation index 0.91
SVM decision value 1.16
SVM RNA-class probability 0.924564
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18364848 104 + 22224390
CGUUUUCCGAACCCUACGAGUAUUUCAGCACCUUCGAUAAGAACCGAUUCGAUCGGGGUUUUUGCUACCCGUGCGUUUCGAGUUCGGUUCGGUUC-----GGGUUCGCU
((...((((((((...((((............))))....((((((((((((.((((((.......))))...))..))))).))))))))))))-----)))..)).. ( -36.10)
>DroSec_CAF1 9500 108 + 1
CGUAUUCCGAACCCUACGAGUAUUUCAGCACGUUCGAUAAGAACCGAUUCGAUCGGGGUUUUU-CUACCCGUGCGUUUCGAGUUCGGUUCGGUUCGGUUUGGGUUCGCU
.......(((((((.(((.((......)).)))((((...((((((((((((.((((((....-..))))...))..))))).)))))))...))))...))))))).. ( -39.50)
>DroSim_CAF1 10359 108 + 1
CGUAUUCCGAACCCUACGAGUAUUUCAGCACGUUCGAUAAGAACCGAUUCGAUCGGGGUUUUU-CUACCCGUGCGUUUCGAGUUCGGUUCGGUUCGGUUUGGGUUCGCU
.......(((((((.(((.((......)).)))((((...((((((((((((.((((((....-..))))...))..))))).)))))))...))))...))))))).. ( -39.50)
>consensus
CGUAUUCCGAACCCUACGAGUAUUUCAGCACGUUCGAUAAGAACCGAUUCGAUCGGGGUUUUU_CUACCCGUGCGUUUCGAGUUCGGUUCGGUUCGGUUUGGGUUCGCU
.......(((((((.(((.((......)).))).(((...((((((((((((.((((((.......))))...))..))))).)))))))...)))....))))))).. (-34.97 = -35.63 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 18,364,848 – 18,364,952
Length 104
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 95.09
Mean single sequence MFE -34.00
Consensus MFE -31.37
Energy contribution -31.37
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.60
Structure conservation index 0.92
SVM decision value 1.39
SVM RNA-class probability 0.949399
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18364848 104 - 22224390
AGCGAACCC-----GAACCGAACCGAACUCGAAACGCACGGGUAGCAAAAACCCCGAUCGAAUCGGUUCUUAUCGAAGGUGCUGAAAUACUCGUAGGGUUCGGAAAACG
..(((((((-----.....(((((((..((((..((...((((.......)))))).)))).)))))))....(((..((......))..)))..)))))))....... ( -32.60)
>DroSec_CAF1 9500 108 - 1
AGCGAACCCAAACCGAACCGAACCGAACUCGAAACGCACGGGUAG-AAAAACCCCGAUCGAAUCGGUUCUUAUCGAACGUGCUGAAAUACUCGUAGGGUUCGGAAUACG
..(((((((....(((...(((((((..((((..((...((((..-....)))))).)))).)))))))...))).(((.(........).))).)))))))....... ( -34.70)
>DroSim_CAF1 10359 108 - 1
AGCGAACCCAAACCGAACCGAACCGAACUCGAAACGCACGGGUAG-AAAAACCCCGAUCGAAUCGGUUCUUAUCGAACGUGCUGAAAUACUCGUAGGGUUCGGAAUACG
..(((((((....(((...(((((((..((((..((...((((..-....)))))).)))).)))))))...))).(((.(........).))).)))))))....... ( -34.70)
>consensus
AGCGAACCCAAACCGAACCGAACCGAACUCGAAACGCACGGGUAG_AAAAACCCCGAUCGAAUCGGUUCUUAUCGAACGUGCUGAAAUACUCGUAGGGUUCGGAAUACG
..(((((((..........(((((((..((((..((...((((.......)))))).)))).)))))))....(((..((......))..)))..)))))))....... (-31.37 = -31.37 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:05 2006