Locus 7365

Sequence ID X_DroMel_CAF1
Location 18,363,718 – 18,363,827
Length 109
Max. P 0.978022
window12067

overview

Window 7

Location 18,363,718 – 18,363,827
Length 109
Sequences 4
Columns 111
Reading direction forward
Mean pairwise identity 89.80
Mean single sequence MFE -36.48
Consensus MFE -33.01
Energy contribution -32.83
Covariance contribution -0.19
Combinations/Pair 1.07
Mean z-score -2.22
Structure conservation index 0.90
SVM decision value 1.80
SVM RNA-class probability 0.978022
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18363718 109 + 22224390
ACGAGGAUGUUACCUGAUGUGCUGGUCCCUAAAAUGUU-UGGGUUCAAC-CCCAGCCAUCGGGAGACAUUAAAUGCAUUAGGGCCACCCAGGCCAAUUUUCCCCCGAGCAC
.((.(((((((.(((((((.(((((.(((.........-.)))......-.)))))))))))).)))))............((((.....)))).......)).))..... ( -37.30)
>DroSec_CAF1 8447 105 + 1
AU---GAUGUUACCUGAUGUGCUGGUCCCUGAAACGUU-UGGGUUCACC-CCCAGCCAUCGGGAGACAUUAAAUGCACUAGGGCCACCCAGGCCAAUU-UCCCCCGAGCAC
.(---((((((.(((((((.(((((.............-.(((....))-))))))))))))).)))))))..(((.....((((.....))))....-((....))))). ( -37.83)
>DroEre_CAF1 7547 104 + 1
AC---GAUGUUACCUGGUGUGCUGGUCCCUGAAAUGUU-UUGGUUCACCCCCCAGCCAUCGGGAGACAUUAAAUGCAUUAGGGCCACCCGGGCCACUU---UCCCGAGGAC
..---((((((.(((((((.(((((....((((.....-....))))....)))))))))))).))))))....((......))..((((((......---.)))).)).. ( -34.10)
>DroYak_CAF1 7445 105 + 1
AU---GAUGUUACCUGAUGUGCUGGUCCCUGAAACGUUUUUGGUUCACC-CCCAGCCAUCGGGAGACAUUAAAUGCAUUAGGGCCACCCAGGCCAUUU--AUCCCGAGCAC
.(---((((((.(((((((.(((((....((((.((....)).))))..-.)))))))))))).)))))))..........((((.....))))....--........... ( -36.70)
>consensus
AC___GAUGUUACCUGAUGUGCUGGUCCCUGAAACGUU_UGGGUUCACC_CCCAGCCAUCGGGAGACAUUAAAUGCAUUAGGGCCACCCAGGCCAAUU__CCCCCGAGCAC
.....((((((.(((((((.(((((....((((.(......).))))....)))))))))))).))))))...........((((.....))))................. (-33.01 = -32.83 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:04 2006