Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,362,670 – 18,362,784 |
Length | 114 |
Max. P | 0.508015 |
Location | 18,362,670 – 18,362,784 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.58 |
Mean single sequence MFE | -44.02 |
Consensus MFE | -28.50 |
Energy contribution | -29.98 |
Covariance contribution | 1.47 |
Combinations/Pair | 1.16 |
Mean z-score | -1.35 |
Structure conservation index | 0.65 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508015 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18362670 114 - 22224390 UGACCACCUUCACCAUGAGCUCCGUUUCGUUGGCAUCGGCUGCCACGGCCACCGAAGCGGCUGCUUGAGGAGAUCCUGCUC------CUGCUGCAGCCGUUUCUGGCGGAGAUUUCAGAU ...............(((.((((....(((.((((.....)))))))((((..(((((((((((...(((((......)))------))...)))))))))))))))))))...)))... ( -49.90) >DroSec_CAF1 7404 114 - 1 UGAUCACCUUUACCAUGAGCUCCGUUUCGUUGGCAUCGGCCGCCACGGCCACCGAAGCGGCUGCUUGGGGAGAUCCUGCUC------CUGCUCCAGCCGUUGCUGGCGGAGAUUUCGGAU ....................((((((((((..((...(((((...))))).....((((((((....(((((......)))------))....))))))))))..))))))....)))). ( -44.90) >DroAna_CAF1 9840 102 - 1 UGAUCAGCUUCACGAGGCGCUCCGUUUCGCUGGCAUCCUCCUUGAUGGCCACGGCAGCGGCGCCUCCCGGAGAUCCAGCUC------C------------UUCUGGCGGCGAUUUCAGGU (((......))).(((((((..(((((((.(((((((......))).))))))).)))))))))))((.((((((..((((------(------------....)).))))))))).)). ( -38.50) >DroSim_CAF1 8451 114 - 1 UGAUCACCUUUACCAUGAGCUCCGUUUCGUUGGCAUCGGCCGCCACGGCCACCGAAGCGGCUGCUUGGGGAGAUCCUGCUC------CUGCUCCAGCCGUUGCUGGCGGAGAUUUCGGAU ....................((((((((((..((...(((((...))))).....((((((((....(((((......)))------))....))))))))))..))))))....)))). ( -44.90) >DroEre_CAF1 6409 120 - 1 CGACCACCUUCAGCAAAAGCUCCGUUUCGCUGGCAUCGGCCGCCACGGCCACCGAAGCGGCUGCUUGAGGAGAUCCUGCUCCUGCUCCUGCUCCAGCCGUUUCUGGCGGGGAUUUCAGAU ...((.((..((((.(((......))).))))((...(((((...)))))...((((((((((....(((((......)))))((....))..))))))))))..))))))......... ( -44.70) >DroYak_CAF1 6441 102 - 1 UGACCACCUUCACCAUAAGCUCCGUUUCGUUGGCAUCGGCUGCCACGGCCAGCGCAGCGGCUGCUUGGGGAGAUC------------------CAGCUGUUUCUGGCGGGGAUUUCAGAU ............((.(((((.(((((.(((((((...((...))...))))))).)))))..)))))))((((((------------------(.(((......)))..))))))).... ( -41.20) >consensus UGACCACCUUCACCAUGAGCUCCGUUUCGUUGGCAUCGGCCGCCACGGCCACCGAAGCGGCUGCUUGGGGAGAUCCUGCUC______CUGCUCCAGCCGUUUCUGGCGGAGAUUUCAGAU ............((.(((((.((((((((.((((...(.....)...)))).))))))))..)))))))(((((((((((........................))))).)))))).... (-28.50 = -29.98 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:03 2006