Locus 7363

Sequence ID X_DroMel_CAF1
Location 18,361,723 – 18,361,843
Length 120
Max. P 0.702951
window12065

overview

Window 5

Location 18,361,723 – 18,361,843
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 93.89
Mean single sequence MFE -42.47
Consensus MFE -41.71
Energy contribution -41.17
Covariance contribution -0.55
Combinations/Pair 1.11
Mean z-score -1.51
Structure conservation index 0.98
SVM decision value 0.36
SVM RNA-class probability 0.702951
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18361723 120 + 22224390
AGCGUCGAUCAUAUAGGCACAGUAGCCCAUGGGGUGAACGGGGGCAUUAAUGGCGAUGCGAGAGAUGCGAUUCUCGGCCUUGUCGUAGAAUGCAAAGAUUUCGCCAUAGUCGGGCAGCUG
...(((.........))).((((.((((((..((((((.....(((((.(((((((.((..((((......)))).)).)))))))..)))))......))))))...)).)))).)))) ( -42.60)
>DroSec_CAF1 6272 120 + 1
AUCGUCGAUCAUAUAGGCACAGUAGCCCAUGGGGUAAUCGGGGGCGUUGAUGGCGACGCGAGAGAUGCGAUUCUUGGCUUCGUCGUAGAAUGCAAAGAUUUCGCCAUAGUUGGGCAGCUG
...(((.........))).((((.((((((((.(.((((....(((((.(((((((.((..((((......)))).)).)))))))..)))))...)))).).)))....))))).)))) ( -43.90)
>DroSim_CAF1 7319 120 + 1
AUCGUCGAUCAUAUAGGCACAGUAGCCCAUGGGGUAAUCGGGGGCGUUGAUGGCGACGCGAGAGAUGCGAUUCUUGGCUUUGUCGUAAAAUGCAAAGAUUUCGCCAUAGUUGGGCAGCUG
...(((.........))).((((.((((((((.(.((((....(((((.(((((((.((..((((......)))).)).)))))))..)))))...)))).).)))....))))).)))) ( -40.90)
>consensus
AUCGUCGAUCAUAUAGGCACAGUAGCCCAUGGGGUAAUCGGGGGCGUUGAUGGCGACGCGAGAGAUGCGAUUCUUGGCUUUGUCGUAGAAUGCAAAGAUUUCGCCAUAGUUGGGCAGCUG
...(((.........))).((((.((((((((.(.((((....(((((.(((((((.((..((((......)))).)).)))))))..)))))...)))).).))))....)))).)))) (-41.71 = -41.17 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:02 2006