Locus 7362

Sequence ID X_DroMel_CAF1
Location 18,361,449 – 18,361,563
Length 114
Max. P 0.805088
window12064

overview

Window 4

Location 18,361,449 – 18,361,563
Length 114
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 71.35
Mean single sequence MFE -37.27
Consensus MFE -26.60
Energy contribution -26.83
Covariance contribution 0.24
Combinations/Pair 1.23
Mean z-score -1.20
Structure conservation index 0.71
SVM decision value 0.63
SVM RNA-class probability 0.805088
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18361449 114 + 22224390
GAUCGUUUGCAUCCAUAUUUCCGUACUCAUCGCC------CGAAAUUGGUGGUAGUUGUGCGGAUGGAAUCUUCCGAAUGUUGGUCCUAUUCCUGAUCAGGGCCACCAACAGUUCAAGGC
........((.((((....(((((((.(((((((------.......)))))).)..))))))))))).......((((((((((.....((((....))))..))))))).)))...)) ( -33.00)
>DroSec_CAF1 6022 102 + 1
GAACGUUCGCAUCCAUGUUUCCGUGCCCAUCGCCUCUAACCACAAGGGGCUGUGGUUGGUUGCGUGGAGUAUUCCGGAUGUCG------------------UCCACCAACAGUUCGAGGC
((((....((.(((((((..(((...((((.((((((.......)))))).)))).)))..))))))))).....((((...)------------------))).......))))..... ( -36.20)
>DroSim_CAF1 7069 102 + 1
GAACGUUCGCAUCCAUGUUUCCGUGCCCAUCGCCUCUAACCACAAGGGGUGGUGGUUGGUGGCGUGGAGUGUACCGGAUGUCG------------------UCCACCAACAGUUCGAGGC
((((((.(((.(((((((..(((...(((((((((((.......))))))))))).)))..)))))))))).)).((((...)------------------))).......))))..... ( -42.60)
>consensus
GAACGUUCGCAUCCAUGUUUCCGUGCCCAUCGCCUCUAACCACAAGGGGUGGUGGUUGGUCGCGUGGAGUAUUCCGGAUGUCG__________________UCCACCAACAGUUCGAGGC
((.((((((..(((((((..(((.(((.(((((((((.......)))))))))))))))..)))))))......))))))))...................................... (-26.60 = -26.83 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:01 2006