| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,355,676 – 18,355,773 |
| Length | 97 |
| Max. P | 0.536294 |
| Location | 18,355,676 – 18,355,773 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 80.65 |
| Mean single sequence MFE | -23.80 |
| Consensus MFE | -15.59 |
| Energy contribution | -15.27 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.536294 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18355676 97 + 22224390 AUCGCGGAGCUUGGCUCAUCAACAUCCACUUGCUUCUCCUCAAACUUCUUAAGUAUCUGUGCAUGGAGAGAAUCCAUGCAACUUCUGAGACGAUUUU ((((.(((((.(((...........)))...)))))..((((.(((.....))).....((((((((.....)))))))).....)))).))))... ( -24.00) >DroSec_CAF1 401 85 + 1 AUCGCGGAGCUUGGCUCAUCAAGAUCCACCUGCUUCUCCU------------GCAUCUGUGCAUGGUGAGCAUCUGUGUAACUCUGGAUUUGCUUUU ..((((((.....((((((((.(...((..(((.......------------)))..))..).)))))))).))))))................... ( -22.20) >DroSim_CAF1 77 85 + 1 AUCGCGGAGCUUGGCUCAUCAAGAUCCACCUGCUUCUCCU------------GCAUCUGUGCAUGGUGAGCAUCUGUGUAACUCUUGAUUUGCUUUU ...(((((((...))))(((((((..(((.(((((..(((------------(((....)))).)).)))))...)))....))))))).))).... ( -25.20) >consensus AUCGCGGAGCUUGGCUCAUCAAGAUCCACCUGCUUCUCCU____________GCAUCUGUGCAUGGUGAGCAUCUGUGUAACUCUUGAUUUGCUUUU .....(((((.(((.((.....)).)))...))))).......................(((((((.......)))))))................. (-15.59 = -15.27 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:58 2006