Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,997,464 – 1,997,574 |
Length | 110 |
Max. P | 0.835421 |
Location | 1,997,464 – 1,997,574 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.62 |
Mean single sequence MFE | -28.86 |
Consensus MFE | -14.44 |
Energy contribution | -14.84 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.16 |
Mean z-score | -1.89 |
Structure conservation index | 0.50 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835421 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1997464 110 + 22224390 CGCCGCUGUGGUGUGCUCACUCACUCGCUUUCGCUCUGAAAGCUCAGUUCGCUCU------CUCUCCUGGGGAGCUUUCGCUCCGUGAUCAUUUUGAAUUCUUU----GAUGGAGGGGGG .((.(((((((((....))).)))..((((((.....))))))..)))..)).((------((((((...(((((....)))))...((((............)----))))))))))). ( -36.90) >DroSec_CAF1 29479 95 + 1 CGCCACUGUGGUGUACUCACUCACUCUCUUUCGCUCUGAAAGCUCAGUUUGCUCUCU----CUCUCCUGGGGAGCUUUCGCUCAGCGAUCAUAUGG-----UUU---------------- .((((..((((((....))).)))......(((((.(((((((((((....))..((----(......))))))))))))...))))).....)))-----)..---------------- ( -28.10) >DroSim_CAF1 23684 93 + 1 CGCCACUGUAGUGUACUCACUCACUCUCUUUCGCUCUGAAAGCUCAGUUCGCUCU------CUCUCCUGGGGAGCUUUCGCUCAGCGAUCAUAUGG-----UUU---------------- .((((..((((((....)))).))......(((((.(((((((((((....))((------(......))))))))))))...))))).....)))-----)..---------------- ( -26.10) >DroEre_CAF1 19257 104 + 1 AGCCACUGUAGAUUAC----UUACUCUUCUUCUCUCUGAAAGCUCAGUGCGCUCUCUCUCUCUCUCCAGGGGAGCUUUUGCUCAGCGAUCAUAUGG-----UUUUUUUUUUGG------- (((((.(((.((((..----.........(((.....))).(((.((((.((((((.((........))))))))...)))).)))))))))))))-----))..........------- ( -21.10) >DroYak_CAF1 29831 92 + 1 CGCUACUGUGGACUAC----GUGCUCUUCUGCUCUCUGAAAGCUCAGUGCGCUCUUU--CUCUCUGCAGAGGAGCUUUCGCUCAGCGAUCAUAUGG-----CU----------------- .((((.(((((.....----..((((((((((.....(((((...((....))))))--).....))))))))))..((((...))))))))))))-----).----------------- ( -32.10) >consensus CGCCACUGUGGUGUACUCACUCACUCUCUUUCGCUCUGAAAGCUCAGUUCGCUCU_U____CUCUCCUGGGGAGCUUUCGCUCAGCGAUCAUAUGG_____UUU________________ ..............................(((((.(((((((((((....))........(((....))))))))))))...)))))................................ (-14.44 = -14.84 + 0.40)
Location | 1,997,464 – 1,997,574 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.62 |
Mean single sequence MFE | -28.76 |
Consensus MFE | -13.18 |
Energy contribution | -13.66 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.14 |
Mean z-score | -1.81 |
Structure conservation index | 0.46 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707259 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1997464 110 - 22224390 CCCCCCUCCAUC----AAAGAAUUCAAAAUGAUCACGGAGCGAAAGCUCCCCAGGAGAG------AGAGCGAACUGAGCUUUCAGAGCGAAAGCGAGUGAGUGAGCACACCACAGCGGCG .....(((((((----(............))))...(((((....)))))...)))).(------(((((.......))))))...((....))..(((.(((....))))))....... ( -35.90) >DroSec_CAF1 29479 95 - 1 ----------------AAA-----CCAUAUGAUCGCUGAGCGAAAGCUCCCCAGGAGAG----AGAGAGCAAACUGAGCUUUCAGAGCGAAAGAGAGUGAGUGAGUACACCACAGUGGCG ----------------...-----((((....(((((((((....))))..........----.((((((.......))))))..)))))......(((.(((....)))))).)))).. ( -31.60) >DroSim_CAF1 23684 93 - 1 ----------------AAA-----CCAUAUGAUCGCUGAGCGAAAGCUCCCCAGGAGAG------AGAGCGAACUGAGCUUUCAGAGCGAAAGAGAGUGAGUGAGUACACUACAGUGGCG ----------------...-----((((....(((((((((....)))).........(------(((((.......))))))..)))))......((.((((....)))))).)))).. ( -30.30) >DroEre_CAF1 19257 104 - 1 -------CCAAAAAAAAAA-----CCAUAUGAUCGCUGAGCAAAAGCUCCCCUGGAGAGAGAGAGAGAGCGCACUGAGCUUUCAGAGAGAAGAAGAGUAA----GUAAUCUACAGUGGCU -------............-----((((..(((..((..((.....((((...)))).......((((((.......)))))).............)).)----)..)))....)))).. ( -20.50) >DroYak_CAF1 29831 92 - 1 -----------------AG-----CCAUAUGAUCGCUGAGCGAAAGCUCCUCUGCAGAGAG--AAAGAGCGCACUGAGCUUUCAGAGAGCAGAAGAGCAC----GUAGUCCACAGUAGCG -----------------..-----..........(((((((....))))((((....))))--....)))((((((.((((.....))))....(..(..----...)..).)))).)). ( -25.50) >consensus ________________AAA_____CCAUAUGAUCGCUGAGCGAAAGCUCCCCAGGAGAG____A_AGAGCGAACUGAGCUUUCAGAGCGAAAGAGAGUGAGUGAGUACACCACAGUGGCG ................................(((((((((....))))................(((((.......))))).............))))).................... (-13.18 = -13.66 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:33 2006