Locus 7358

Sequence ID X_DroMel_CAF1
Location 18,353,912 – 18,354,016
Length 104
Max. P 0.830718
window12059

overview

Window 9

Location 18,353,912 – 18,354,016
Length 104
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 89.78
Mean single sequence MFE -38.42
Consensus MFE -33.69
Energy contribution -33.67
Covariance contribution -0.02
Combinations/Pair 1.30
Mean z-score -1.73
Structure conservation index 0.88
SVM decision value 0.71
SVM RNA-class probability 0.830718
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18353912 104 + 22224390
A-AAAUCCUCGCAGGCGGAGCACUCUUACAAGCUGAACCCUAAGCUGUUAGUACAGCUGCAGCACUGCGAGGAGCACCAGAUUCCUCUGGUGGUUGUCCUCGGCG
.-...((((((((((((.(((...((.(((.(((........)))))).))....))).).)).))))))))).(((((((....)))))))((((....)))). ( -43.40)
>DroSec_CAF1 6789 104 + 1
A-AAAUCCUCUCAGGCGGAACACUCUUACAAGCUGAACCCUAAGCUGCUAGUACAGCUGCAGCACUGCGAGGAGCACCAGAUUCCUCUGGUGGUGGUCCUCGGCG
.-...(((((.(((..(((....))).....((((.......(((((......))))).)))).))).))))).(((((((....)))))))((.(....).)). ( -34.10)
>DroAna_CAF1 17309 105 + 1
GGAUAUUUUACCAGGCGGAGCACUCCUAUAAGUUGAAUCCCAAGCUGUUGGUGCAACUGCAGCACUGCGAGGAGCAUCAGAUACCCUUGGUGGUGGUUCUGGGCG
..........(((((((((....)))..........((((((((...(((((((..(((((....))).))..))))))).....))))).))).).)))))... ( -30.70)
>DroSim_CAF1 6009 104 + 1
A-AAAUCCUCGCAGGCGGAGCACUCUUACAAGCUGAACCCUAAGCUGCUAGUACAGCUGCAGCACUGCGAGGAGCACCAGAUUCCUCUGGUGGUGGUCCUCGGCG
.-...((((((((((((.(((...((....((((........))))...))....))).).)).))))))))).(((((((....)))))))((.(....).)). ( -41.50)
>DroEre_CAF1 6346 104 + 1
A-AAAUCCUUGCAGGCGGAGCACUCUUACAAGCUGAACCCUAAGCUGCUGGUGCAGCUGCAGCACUGCGAGGAGCACCAGAUUCCUCUGGUGGUGGUCCUCGGCG
.-...(((((((((..(((....))).....((((.......((((((....)))))).)))).))))))))).(((((((....)))))))((.(....).)). ( -42.60)
>DroYak_CAF1 5963 104 + 1
A-AAAUCCUUGCAGGCGGAGCAUUCUUAUAAGCUGAACCCUAAGCUACUGGUGCAGCUGCAGCACUGCGAGGAGCACCAGAUUCCCCUGGUGGUUGUCCUCGGCG
.-...((((((((((((.(((...((....((((........))))...))....))).).)).))))))))).((((((......))))))((((....)))). ( -38.20)
>consensus
A_AAAUCCUCGCAGGCGGAGCACUCUUACAAGCUGAACCCUAAGCUGCUAGUACAGCUGCAGCACUGCGAGGAGCACCAGAUUCCUCUGGUGGUGGUCCUCGGCG
.....(((((((((..(((....))).....((((.......((((((....)))))).)))).))))))))).((((((......))))))...((.....)). (-33.69 = -33.67 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:56 2006