Locus 7357

Sequence ID X_DroMel_CAF1
Location 18,351,479 – 18,351,586
Length 107
Max. P 0.970469
window12058

overview

Window 8

Location 18,351,479 – 18,351,586
Length 107
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 85.13
Mean single sequence MFE -46.75
Consensus MFE -41.51
Energy contribution -42.35
Covariance contribution 0.84
Combinations/Pair 1.21
Mean z-score -2.52
Structure conservation index 0.89
SVM decision value 1.66
SVM RNA-class probability 0.970469
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18351479 107 + 22224390
-------AAAAUAACAUGUUGCGUUCAA---UUGGCCGCCAGUGGCGCUGUAGUGCUGCGUUUCAG---UGUGCAACGUUCCAGACGGCGCCCUCUGGCGGCGGACGCGUCAGCUCGUCC
-------.........((.(((((((..---...((((((((.((((((((..((..(((((.(..---...).)))))..)).))))))))..))))))))))))))).))........ ( -48.70)
>DroSec_CAF1 4387 105 + 1
-------AAA--CACAUGUUGCGUUCAA---UUGGCCGCCAGUGGCGCUGUAGUGCUGCGUUUCAG---UGUGCAACGUUCCAGACGGCGCCCUCUGGCGGCGGACGCGUCAGCUCGUCC
-------...--....((.(((((((..---...((((((((.((((((((..((..(((((.(..---...).)))))..)).))))))))..))))))))))))))).))........ ( -48.70)
>DroAna_CAF1 14936 109 + 1
A-ACA--AAA--CACAUGUUGCGUUCAA---UUGGCCGCCAGUGGCGCUGUAGUGCUGCGUUUCAG---UGUGCAACGUUCCAGACGGCGCCCUCUGGCGGCGGGCGUUCAAGCUCUGCC
.-...--...--........((......---...((((((((.((((((((..((..(((((.(..---...).)))))..)).))))))))..))))))))((((......)))).)). ( -47.20)
>DroSim_CAF1 3166 105 + 1
-------AAA--CACAUGUUGCGUUCAA---UUGGCCGCCAGUGGCGCUGUAGUGCUGCGUUUCAG---UGUGCAACGUUCCAGACGGCGCCCUCUGGCGGCGGACGCGUCAGCUCGUCC
-------...--....((.(((((((..---...((((((((.((((((((..((..(((((.(..---...).)))))..)).))))))))..))))))))))))))).))........ ( -48.70)
>DroWil_CAF1 1741 111 + 1
AUUUAAAAAAUUUCAAUGUUGCGUUCAGUAUUUGGCCGCCAGUGGCGCUGUAGUGCUACGUUUCAGUGGUGUGCAAUGUUCCAG------CCCUCUGGCGGCGAA---GUUGGUAAAACC
.((((...((((((.....(((.....)))....((((((((.((.((((..(..((((......))))..).........)))------))).)))))))))))---)))..))))... ( -39.00)
>DroYak_CAF1 3974 105 + 1
-------AAA--CACAUGUUGCGUUCAA---UUGGCCGCCAGUGGCGCUGUAGUGCUGCGUUUCAG---UGUGCAACGUUCCAGACGGCGCCCUCUGGCGGCGGGCGCGUCAGCUCGUCC
-------...--....((.(((((((..---...((((((((.((((((((..((..(((((.(..---...).)))))..)).))))))))..))))))))))))))).))........ ( -48.20)
>consensus
_______AAA__CACAUGUUGCGUUCAA___UUGGCCGCCAGUGGCGCUGUAGUGCUGCGUUUCAG___UGUGCAACGUUCCAGACGGCGCCCUCUGGCGGCGGACGCGUCAGCUCGUCC
................((.(((((((........((((((((.((((((((..((..(((((.((......)).)))))..)).))))))))..))))))))))))))).))........ (-41.51 = -42.35 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:55 2006