| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,350,999 – 18,351,092 |
| Length | 93 |
| Max. P | 0.999014 |
| Location | 18,350,999 – 18,351,092 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 75.08 |
| Mean single sequence MFE | -20.97 |
| Consensus MFE | -13.35 |
| Energy contribution | -13.47 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.60 |
| Structure conservation index | 0.64 |
| SVM decision value | 3.33 |
| SVM RNA-class probability | 0.999014 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18350999 93 - 22224390 -------CACACACACACAAGAUCAAGCUAGAUUACCGUUAGUCAGCUGAUCUCGUC----------GGACACACACACACAACAGCAACUUUAGUGAUAUUUAAAAAUA -------......(((((.((((((.(((.(((((....)))))))))))))).)).----------(......)...................)))............. ( -15.70) >DroSim_CAF1 2677 94 - 1 ACACGCA----CACACACAAGAUCAAGCUAGAUUACCGUUAGUCAGCUGAUCUCGGG----------GGACCCA--CACACAAUAGCAACUUUAGUGAUAUUUAAAAAUA .......----....(((.((((((.(((.(((((....)))))))))))))).((.----------...))..--..................)))............. ( -19.80) >DroYak_CAF1 3462 107 - 1 -CACACACACACACGCACAAGAUCCAGCUAGAUAACCGUUAGUCAGCUGAUCUUGGCAGCCACAAUUGCACACU--CACACAAUAGUAACUGUUGUGGAAUAUAAAAAUA -.............((.(((((((.((((.(((........)))))))))))))))).((.......))....(--(.((((((((...))))))))))........... ( -27.40) >consensus _CAC_CACACACACACACAAGAUCAAGCUAGAUUACCGUUAGUCAGCUGAUCUCGGC__________GGACACA__CACACAAUAGCAACUUUAGUGAUAUUUAAAAAUA .............(((.(.(((((.((((.(((((....)))))))))))))).)............(....).....................)))............. (-13.35 = -13.47 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:54 2006