Locus 7355

Sequence ID X_DroMel_CAF1
Location 18,350,573 – 18,350,700
Length 127
Max. P 0.998842
window12055 window12056

overview

Window 5

Location 18,350,573 – 18,350,663
Length 90
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 90.61
Mean single sequence MFE -19.78
Consensus MFE -18.29
Energy contribution -18.29
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.25
Structure conservation index 0.92
SVM decision value 0.37
SVM RNA-class probability 0.710263
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18350573 90 - 22224390
AAUCGCUAUAACCACCAUGUGCCUUUUGUACAUGCCUCCUGUUUGACCAGUCGCUCUCUU--------------------UUCAGUCAGUCAGUCGGUCAUAGAGCACUC
.....((((.(((..(((((((.....)))))))....(((.(((((.............--------------------....))))).)))..))).))))....... ( -19.13)
>DroSec_CAF1 3474 90 - 1
AAUCGCUAUAACCACCAUGUGCCUUUUGUACAUGCCUCCUGUUUGACCAGUCGCUCUCUU--------------------UUCAGUCAGUCAGUCGGUCAUAGAGCACUC
.....((((.(((..(((((((.....)))))))....(((.(((((.............--------------------....))))).)))..))).))))....... ( -19.13)
>DroSim_CAF1 2254 90 - 1
AAUCGCUAUAACCACCAUGUGCCUUUUGUACAUGCCUCCUGUUUGACCAGUCGCUCUCUU--------------------UUCAGUCAGUCAGUCGGUCAUAGAGCACUC
.....((((.(((..(((((((.....)))))))....(((.(((((.............--------------------....))))).)))..))).))))....... ( -19.13)
>DroEre_CAF1 3269 90 - 1
AAUCGCUAUAACCACCAUGUGCCUUUUGUACAUGCCUCCUGUUUGACCAGUCGCUCUCUU--------------------CUUAGUCAGUCAGUCGGUCAUAGACCACUC
.....((((.(((..(((((((.....)))))))....(((.(((((.............--------------------....))))).)))..))).))))....... ( -19.13)
>DroYak_CAF1 3021 110 - 1
AAUCGCUAUAACCACCAUGUGCCUUUUGUACAUGCCUCCUGUUUGACCAGUCGCUCUCUUUGCUUGCCAAUUGCUCUCGUUUCAGUCAGUCAGUCGGUCAUAGAGCACUC
.....((((.(((..(((((((.....)))))))....(((.(((((.....((.......))..((.....))..........))))).)))..))).))))....... ( -22.40)
>consensus
AAUCGCUAUAACCACCAUGUGCCUUUUGUACAUGCCUCCUGUUUGACCAGUCGCUCUCUU____________________UUCAGUCAGUCAGUCGGUCAUAGAGCACUC
.....((((.(((..(((((((.....)))))))....(((.(((((.....................................))))).)))..))).))))....... (-18.29 = -18.29 +  -0.00)

alignment

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secondary structure

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dotplot

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Window 6

Location 18,350,603 – 18,350,700
Length 97
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 94.85
Mean single sequence MFE -26.84
Consensus MFE -26.40
Energy contribution -26.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.85
Structure conservation index 0.98
SVM decision value 3.25
SVM RNA-class probability 0.998842
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18350603 97 - 22224390
UGGAUCGGUUGAUUGUGGUCUAGCAGGUUUUUGAUAUAAUCGCUAUAACCACCAUGUGCCUUUUGUACAUGCCUCCUGUUUGACCAGUCGCUCUCUU----------
..(((.(((..(..(((((.((((.((((........))))))))..)))))(((((((.....)))))))........)..))).)))........---------- ( -26.40)
>DroSec_CAF1 3504 97 - 1
UGGAUCGGUUGAUUGUGGUCUAGCUGGUUUUUGAUAUAAUCGCUAUAACCACCAUGUGCCUUUUGUACAUGCCUCCUGUUUGACCAGUCGCUCUCUU----------
..(((.(((..(..(((((.((((.((((........))))))))..)))))(((((((.....)))))))........)..))).)))........---------- ( -26.40)
>DroSim_CAF1 2284 97 - 1
UGGAUCGGUUGAUUGUGGUCUAGCAGGUUUUUGAUAUAAUCGCUAUAACCACCAUGUGCCUUUUGUACAUGCCUCCUGUUUGACCAGUCGCUCUCUU----------
..(((.(((..(..(((((.((((.((((........))))))))..)))))(((((((.....)))))))........)..))).)))........---------- ( -26.40)
>DroEre_CAF1 3299 97 - 1
GGGAUCGGUUGAUUGUGGUCUAGCAGGUUUUCGAUAUAAUCGCUAUAACCACCAUGUGCCUUUUGUACAUGCCUCCUGUUUGACCAGUCGCUCUCUU----------
(.(((.(((..(..(((((.((((.((((........))))))))..)))))(((((((.....)))))))........)..))).))).)......---------- ( -27.60)
>DroYak_CAF1 3061 107 - 1
UGGAUCGGUUGAUUGUGGUCUAGCAGGUUUUUGAUAUAAUCGCUAUAACCACCAUGUGCCUUUUGUACAUGCCUCCUGUUUGACCAGUCGCUCUCUUUGCUUGCCAA
..(((.(((..(..(((((.((((.((((........))))))))..)))))(((((((.....)))))))........)..))).)))((.......))....... ( -27.40)
>consensus
UGGAUCGGUUGAUUGUGGUCUAGCAGGUUUUUGAUAUAAUCGCUAUAACCACCAUGUGCCUUUUGUACAUGCCUCCUGUUUGACCAGUCGCUCUCUU__________
..(((.(((..(..(((((.((((.((((........))))))))..)))))(((((((.....)))))))........)..))).))).................. (-26.40 = -26.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:53 2006