Locus 7353

Sequence ID X_DroMel_CAF1
Location 18,343,315 – 18,343,426
Length 111
Max. P 0.960900
window12052

overview

Window 2

Location 18,343,315 – 18,343,426
Length 111
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 81.60
Mean single sequence MFE -43.85
Consensus MFE -27.30
Energy contribution -28.55
Covariance contribution 1.25
Combinations/Pair 1.04
Mean z-score -2.60
Structure conservation index 0.62
SVM decision value 1.52
SVM RNA-class probability 0.960900
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18343315 111 + 22224390
UAAAGGCUAUCCACAAUCUACGGCCGCAGUUGAGUGAUUGCCCCGCUGUGUGGAGUGUCCCAUGACAAAGGGAUAUUCGUAGGUG--CGCUUAGGCGCAGUCAU------GUCCACGUA
....((((.......((((((..(((((((.(.((....)).).)))))).)(((((((((........)))))))))))))))(--(((....))))))))..------......... ( -38.60)
>DroSec_CAF1 21243 105 + 1
UAAAGGCUACCCACAAUCUGUGGCCG---GUGAGUGAUUGCCCCGCUGGGUGGAGUGUCCCAUGACAAAGGGAUAUUCGUAGCUC--CGU---GGCGCAGUCAU------GCCCACGUA
....((((((.........))))))(---(.(.((((((((.((((.((((.(((((((((........)))))))))...))))--.))---)).))))))))------.)))..... ( -47.20)
>DroSim_CAF1 21880 105 + 1
UAAAGGCUACCCACAAUCUGUGGCCG---GUGAGUGAUUGCCCCGCUGGGUGGAGUGUCCCAUGACAAAGGGAUAUUGGUGGCUC--CGU---GGCGCAGUCAU------GUCCACGUA
....((((((.........))))))(---(...((((((((.((((.((((.(.(((((((........)))))))...).))))--.))---)).))))))))------..))..... ( -44.30)
>DroYak_CAF1 21109 108 + 1
UAAUGGC------CUAUCUGUGGCCA--AGUGAGUGAUUGCCCCGCUCCGUGGAGUGUCCCAUGACAAAGGGAUAUUCAGAGGACGCGGU---GACGCAGUCAUGUCUAUGUCCACGUA
...((((------(.......)))))--((...((((((((((((((((...(((((((((........)))))))))...))).)))).---)..))))))))..))........... ( -45.30)
>consensus
UAAAGGCUACCCACAAUCUGUGGCCG___GUGAGUGAUUGCCCCGCUGGGUGGAGUGUCCCAUGACAAAGGGAUAUUCGUAGCUC__CGU___GGCGCAGUCAU______GUCCACGUA
....((((((.........))))))........(((((((((((((...)))(((((((((........)))))))))...............)).))))))))............... (-27.30 = -28.55 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:50 2006