Locus 7351

Sequence ID X_DroMel_CAF1
Location 18,341,175 – 18,341,270
Length 95
Max. P 0.582699
window12050

overview

Window 0

Location 18,341,175 – 18,341,270
Length 95
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 73.72
Mean single sequence MFE -26.70
Consensus MFE -14.97
Energy contribution -14.87
Covariance contribution -0.11
Combinations/Pair 1.13
Mean z-score -1.71
Structure conservation index 0.56
SVM decision value 0.10
SVM RNA-class probability 0.582699
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18341175 95 + 22224390
GCACAGGUUCGGCCAAACCGAAUGGUGUCUCUACACUGGGAAAAAAUGUGCGAGCACUUUUCGUG-----------------------UGCUUGCAAUUAAAAUAAAUUUCAAAAUAA
.(((..((((((.....)))))).)))((((......)))).......(((((((((.......)-----------------------))))))))...................... ( -27.10)
>DroSec_CAF1 19092 95 + 1
GCACAAGUUCGGUCUGACCAAGUGGUGUCUCUACACUGGGAAAAAAUGUGCGAGCAUUUUCCGGG-----------------------UGCUUGCAAUUAAAAUAAAUUUCAAAAGAA
............(((..((.((((.........)))).))........((((((((((.....))-----------------------))))))))..................))). ( -20.30)
>DroEre_CAF1 18751 117 + 1
GCACAGGUUCGGCCACACCGAAUGGUGUCUAUACACCGGAAAAAAA-GUGCGAACAUUUUCCGUGCGCUGUGAUUGGAGUGCAGGAAAUGCUUACCAUUCAAAUCAAUUUUAAAAGAA
((((..((((((.....))))))(((((....)))))((((((...-((....)).))))))))))....(((.(((...(((.....)))...))).)))................. ( -32.70)
>consensus
GCACAGGUUCGGCCAAACCGAAUGGUGUCUCUACACUGGGAAAAAAUGUGCGAGCAUUUUCCGUG_______________________UGCUUGCAAUUAAAAUAAAUUUCAAAAGAA
((((..((((((.....))))))(((((....)))))..........))))................................................................... (-14.97 = -14.87 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:48 2006