| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,340,935 – 18,341,054 |
| Length | 119 |
| Max. P | 0.713810 |
| Location | 18,340,935 – 18,341,054 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.86 |
| Mean single sequence MFE | -29.40 |
| Consensus MFE | -21.21 |
| Energy contribution | -21.09 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.536146 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18340935 119 + 22224390 GUUUCUCCACCAAGGUGAAAAAAAACCA-AGAGUUUCCCCUGUCUUUCAAAUGUGUGUGUUUGUCAAUCGAACCUGCAGCUUCGAUUCAAAAGCAUGGUGGGAAAGGAGAAUGUUAAUAU ..((((((.....(((........))).-....(((((((((((((((((((......)))))..(((((((.(....).)))))))..)))).)))).))))))))))))......... ( -30.00) >DroSec_CAF1 18856 115 + 1 GUUUCUCCGCCAAGGUGAA----AACCA-AGAGUUUCUCCUGUUUUUCAAAUGUGUGUGUUUGUCAAUCGAACCUACAGCUUCGAUUCAAAGGCAUGGUGGAAAAGGCGAAUGUUAAUAU ((((.((((((....((((----((.((-.(((...))).)).)))))).....((((.((((..(((((((.(....).))))))))))).))))))))))..))))............ ( -30.40) >DroEre_CAF1 18522 108 + 1 CUUUCUCCGCCAAGGUGAA----AAUCA-GGAGUUUCCCCUGUUUUUCAAAUG--AGU-----CCAAUCGAACCUGCAGCUUCAGUUCAAGAGCAUGGUGGAUAAGGAGAAUGUUAAUAU ((((.((((((((((((((----((.((-((.......)))).)))))...((--(..-----....))).))))...((((........)))).))))))).))))............. ( -30.30) >DroYak_CAF1 18768 111 + 1 GUUUCUCCACCAAGGUGAA----AAUCAAAGAGUUUCCCCUGUUUUUCAAAUGUGUGU-----CCAAUCGAACCUGCAGCUUCGAUUCAAAAGCAUGGUGGAAAAGGAGAAUGUUAAUAU ..((((((....(((.(((----(.((...)).)))).))).(((((((.((((....-----..(((((((.(....).))))))).....))))..)))))))))))))......... ( -26.90) >consensus GUUUCUCCACCAAGGUGAA____AACCA_AGAGUUUCCCCUGUUUUUCAAAUGUGUGU_____CCAAUCGAACCUGCAGCUUCGAUUCAAAAGCAUGGUGGAAAAGGAGAAUGUUAAUAU ..((((((.....(((........)))......((((((((((((((..................(((((((.(....).))))))).))))))).)).))))).))))))......... (-21.21 = -21.09 + -0.12)
| Location | 18,340,935 – 18,341,054 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.86 |
| Mean single sequence MFE | -30.15 |
| Consensus MFE | -19.11 |
| Energy contribution | -20.43 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.713810 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18340935 119 - 22224390 AUAUUAACAUUCUCCUUUCCCACCAUGCUUUUGAAUCGAAGCUGCAGGUUCGAUUGACAAACACACACAUUUGAAAGACAGGGGAAACUCU-UGGUUUUUUUUCACCUUGGUGGAGAAAC ...............((((((((((((..(((((((((((.(....).)))))))..))))..)).......(((((((((((....))))-..))))))).......)))))).)))). ( -30.30) >DroSec_CAF1 18856 115 - 1 AUAUUAACAUUCGCCUUUUCCACCAUGCCUUUGAAUCGAAGCUGUAGGUUCGAUUGACAAACACACACAUUUGAAAAACAGGAGAAACUCU-UGGUU----UUCACCUUGGCGGAGAAAC ...............((((((.(((((..(((((((((((.(....).)))))))..))))..))......((((((.((((((...))))-)).))----))))...))).)))))).. ( -28.90) >DroEre_CAF1 18522 108 - 1 AUAUUAACAUUCUCCUUAUCCACCAUGCUCUUGAACUGAAGCUGCAGGUUCGAUUGG-----ACU--CAUUUGAAAAACAGGGGAAACUCC-UGAUU----UUCACCUUGGCGGAGAAAG .........((((((....((((((.....(((((((.........))))))).)))-----...--....((((((.(((((....).))-)).))----))))...))).)))))).. ( -29.50) >DroYak_CAF1 18768 111 - 1 AUAUUAACAUUCUCCUUUUCCACCAUGCUUUUGAAUCGAAGCUGCAGGUUCGAUUGG-----ACACACAUUUGAAAAACAGGGGAAACUCUUUGAUU----UUCACCUUGGUGGAGAAAC ...............((((((((((.....((.(((((((.(....).))))))).)-----)........((((((.(((((....)))..)).))----))))...)))))))))).. ( -31.90) >consensus AUAUUAACAUUCUCCUUUUCCACCAUGCUUUUGAAUCGAAGCUGCAGGUUCGAUUGA_____ACACACAUUUGAAAAACAGGGGAAACUCU_UGAUU____UUCACCUUGGCGGAGAAAC ...............((((((((((........(((((((.(....).))))))).........................(((....)))..................)))))))))).. (-19.11 = -20.43 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:47 2006