Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,996,776 – 1,996,933 |
Length | 157 |
Max. P | 0.972865 |
Location | 1,996,776 – 1,996,893 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.41 |
Mean single sequence MFE | -30.64 |
Consensus MFE | -25.39 |
Energy contribution | -25.27 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.09 |
Mean z-score | -2.02 |
Structure conservation index | 0.83 |
SVM decision value | 1.70 |
SVM RNA-class probability | 0.972865 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1996776 117 - 22224390 UCUUCUCCGCAGGCGGCACAAUGGUGCUAUCUCUUUUGCACCCCAUAAA-AAACCUUUUCCGGUGGUGCGCCCAUUU--UUUAUUCGCUUCGAUCUUCCGUCGGCAUUUUGUACUGCCAA ...........(((((.((((.(((((..........(((((((..(((-(....))))..)).)))))........--...........((((.....))))))))))))).))))).. ( -30.10) >DroSec_CAF1 28793 118 - 1 UCUUCUCCGCAGGCGGCACAAUGGUGCUAUCUCUGUUGCACCCCAUAAAAAAACCUUUUCCGGUGGUGCGCCCAUUU--UUUAUUCGCUUCGAUCUUCCGUCGGCAUUUUAAACUGCCAA .......((.(((((((((....))))..........(((((((..((((.....))))..)).)))))........--......)))))))..........((((........)))).. ( -28.90) >DroSim_CAF1 23002 118 - 1 UCUUCUCCGCAGGCGGCACAAUGGUGCUAUCUCUGUUGCACCCCAUAAAAAAACCUUUUCCGGUGGUGCGCCCAUUU--UUUAUUCGCUUCGAUCUUCCGUCGGCAUUUUAAACUGCCAA .......((.(((((((((....))))..........(((((((..((((.....))))..)).)))))........--......)))))))..........((((........)))).. ( -28.90) >DroEre_CAF1 18573 119 - 1 UCUCCCUCGCAGGCGGCACCAUGGUGCUAUCUUUGUUGCACCCCAUAAA-AAACCUCUUUCGGUGGUGUGCCCAUUUUUUUUAUUCGUUUCGAUCUUCCGUCGGCAUUUUGUGCUGCCAA ...........((((((((...(((((..........((((.((((..(-((.....)))..)))).))))...................((((.....)))))))))..)))))))).. ( -33.80) >DroYak_CAF1 29323 117 - 1 UCUCUCCC-CAGGCGGCACAAUGGUGCUGUCUCUGUUGCACUCCAUAAAAAAACCUCUUUCGGUGAUGCGCCCAUUU--UUUAUUCGUUUCGAUCUUCCGUCGGCAUUUUGUGCUGCCAA ........-..((((((((((.(((((.(((.(((.........................))).)))))))).....--..........(((((.....)))))....)))))))))).. ( -31.51) >consensus UCUUCUCCGCAGGCGGCACAAUGGUGCUAUCUCUGUUGCACCCCAUAAAAAAACCUUUUCCGGUGGUGCGCCCAUUU__UUUAUUCGCUUCGAUCUUCCGUCGGCAUUUUGUACUGCCAA ...........((((((((....))))).........(((((((.................)).))))))))...................(((.....)))((((........)))).. (-25.39 = -25.27 + -0.12)
Location | 1,996,816 – 1,996,933 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.30 |
Mean single sequence MFE | -24.49 |
Consensus MFE | -20.46 |
Energy contribution | -20.58 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.14 |
Mean z-score | -1.45 |
Structure conservation index | 0.84 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.686275 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1996816 117 - 22224390 CCCACUGAACCACUAAACAUUUAGCUUGUCUCUGUCCUAUUCUUCUCCGCAGGCGGCACAAUGGUGCUAUCUCUUUUGCACCCCAUAAA-AAACCUUUUCCGGUGGUGCGCCCAUUU--U ..((..((....((((....))))....))..)).................((((((((....))))).........(((((((..(((-(....))))..)).)))))))).....--. ( -23.80) >DroSec_CAF1 28833 118 - 1 CCCACUGAACCACUAAACAUUCAGCUUGCCUCUGUCCUUUUCUUCUCCGCAGGCGGCACAAUGGUGCUAUCUCUGUUGCACCCCAUAAAAAAACCUUUUCCGGUGGUGCGCCCAUUU--U ...............((((....((((((...................))))))(((((....))))).....))))(((((((..((((.....))))..)).)))))........--. ( -25.61) >DroSim_CAF1 23042 118 - 1 CCCACUGAACCACUAAACAUUCAGCUUGCCUUUGUCCUUUUCUUCUCCGCAGGCGGCACAAUGGUGCUAUCUCUGUUGCACCCCAUAAAAAAACCUUUUCCGGUGGUGCGCCCAUUU--U ...............((((....((((((...................))))))(((((....))))).....))))(((((((..((((.....))))..)).)))))........--. ( -25.61) >DroEre_CAF1 18613 119 - 1 CCCACUGAACCACUAAACAGCCAGCUUGUCUCUAUCCCUUUCUCCCUCGCAGGCGGCACCAUGGUGCUAUCUUUGUUGCACCCCAUAAA-AAACCUCUUUCGGUGGUGUGCCCAUUUUUU .((((((((..........(((.((((((...................))))))))).....(((((..........))))).......-........)))))))).............. ( -29.01) >DroYak_CAF1 29363 117 - 1 CCCACACAACCACUAAACACCCAGCUUGUCUCUGUCCCUUUCUCUCCC-CAGGCGGCACAAUGGUGCUGUCUCUGUUGCACUCCAUAAAAAAACCUCUUUCGGUGAUGCGCCCAUUU--U .................(((((((.......)))..............-.(((((((((....))))))))).............................))))............--. ( -18.40) >consensus CCCACUGAACCACUAAACAUUCAGCUUGUCUCUGUCCUUUUCUUCUCCGCAGGCGGCACAAUGGUGCUAUCUCUGUUGCACCCCAUAAAAAAACCUUUUCCGGUGGUGCGCCCAUUU__U ...............((((....((((((...................))))))(((((....))))).....))))(((((((.................)).)))))........... (-20.46 = -20.58 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:31 2006