Locus 7349

Sequence ID	X_DroMel_CAF1
Location	18,339,384 – 18,339,495
Length	111
Max. P	0.986418

overview

Window 6

Location	18,339,384 – 18,339,495
Length	111
Sequences	5
Columns	120
Reading direction	forward
Mean pairwise identity	93.73
Mean single sequence MFE	-24.70
Consensus MFE	-23.08
Energy contribution	-23.48
Covariance contribution	0.40
Combinations/Pair	1.00
Mean z-score	-1.62
Structure conservation index	0.93
SVM decision value	2.04
SVM RNA-class probability	0.986418
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18339384 111 + 22224390
ACGCAGUCGAAAAUGAAAAUGUUGCCCAGC----CAGCAGACCCACCAC---CACCACCAUAC--ACAUUUUCACUUCACCCCGCCGCAUGUUGUGCAACAUGUUGCAGACGACGCAACG
..((.((((....((((((((((((.....----..)))(......)..---...........--))))))))).........((.(((((((....))))))).))...)))))).... ( -26.10)
>DroSec_CAF1 17319 111 + 1
ACGCAGUCGAAAAUGAAAAUGUUGCCCAGC----CAGCAGACCCACCAC---CACCACCAUAC--ACAUUUUCACUUCACCCCGCCGCAUGUUGUGCAACAUGUUGCAGACGACGCAACG
..((.((((....((((((((((((.....----..)))(......)..---...........--))))))))).........((.(((((((....))))))).))...)))))).... ( -26.10)
>DroSim_CAF1 17154 111 + 1
ACGCAGUCGAAAAUGAAAAUGUUGCCCAGC----CAGCAGACCCACCAC---CACCACCAUAC--ACAUUUUCACUUCACCCCGCCGCAUGUUGUGCAACAUGUUGCAGACGACGCAACG
..((.((((....((((((((((((.....----..)))(......)..---...........--))))))))).........((.(((((((....))))))).))...)))))).... ( -26.10)
>DroEre_CAF1 16972 112 + 1
ACGCAGUCGAAAAUGAAAAUGUUGCCCAGC----CAGCAGACCCACCACCACCACCACCAUACACACACUUACACUUCACCCCGCCGCAUGUUGUGCAACAUGUUGCAGACGACGC----
..((.((((..........(((((......----)))))............................................((.(((((((....))))))).))...))))))---- ( -20.30)
>DroYak_CAF1 17399 113 + 1
ACGCAGUCGAAAAUGAAAAUGUUGCCCAGCCAGCCAGCAGACCCACCAC---CACCACCAUACACACAUUUUCACUUCACCCCGCCGCAUGUUGUGCAACAUGUUGCAGACGACGC----
.((..((((((..(((((((((((....((......)).(......)..---..........)).))))))))).))).....((.(((((((....))))))).)).)))..)).---- ( -24.90)
>consensus
ACGCAGUCGAAAAUGAAAAUGUUGCCCAGC____CAGCAGACCCACCAC___CACCACCAUAC__ACAUUUUCACUUCACCCCGCCGCAUGUUGUGCAACAUGUUGCAGACGACGCAACG
..((.((((....((((((((((((...........)))(......)..................))))))))).........((.(((((((....))))))).))...)))))).... (-23.08 = -23.48 +   0.40)

alignment

secondary structure

dotplot

Window 7

Location	18,339,384 – 18,339,495
Length	111
Sequences	5
Columns	120
Reading direction	reverse
Mean pairwise identity	93.73
Mean single sequence MFE	-39.08
Consensus MFE	-35.14
Energy contribution	-35.18
Covariance contribution	0.04
Combinations/Pair	1.03
Mean z-score	-1.37
Structure conservation index	0.90
SVM decision value	0.86
SVM RNA-class probability	0.869416
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18339384 111 - 22224390
CGUUGCGUCGUCUGCAACAUGUUGCACAACAUGCGGCGGGGUGAAGUGAAAAUGU--GUAUGGUGGUG---GUGGUGGGUCUGCUG----GCUGGGCAACAUUUUCAUUUUCGACUGCGU
....(((((((((((..((((((....))))))..)))))..(((((((((((((--((..(.(((..---(........)..)))----.)...)).))))))))))))))))).)).. ( -39.70)
>DroSec_CAF1 17319 111 - 1
CGUUGCGUCGUCUGCAACAUGUUGCACAACAUGCGGCGGGGUGAAGUGAAAAUGU--GUAUGGUGGUG---GUGGUGGGUCUGCUG----GCUGGGCAACAUUUUCAUUUUCGACUGCGU
....(((((((((((..((((((....))))))..)))))..(((((((((((((--((..(.(((..---(........)..)))----.)...)).))))))))))))))))).)).. ( -39.70)
>DroSim_CAF1 17154 111 - 1
CGUUGCGUCGUCUGCAACAUGUUGCACAACAUGCGGCGGGGUGAAGUGAAAAUGU--GUAUGGUGGUG---GUGGUGGGUCUGCUG----GCUGGGCAACAUUUUCAUUUUCGACUGCGU
....(((((((((((..((((((....))))))..)))))..(((((((((((((--((..(.(((..---(........)..)))----.)...)).))))))))))))))))).)).. ( -39.70)
>DroEre_CAF1 16972 112 - 1
----GCGUCGUCUGCAACAUGUUGCACAACAUGCGGCGGGGUGAAGUGUAAGUGUGUGUAUGGUGGUGGUGGUGGUGGGUCUGCUG----GCUGGGCAACAUUUUCAUUUUCGACUGCGU
----(((((((((((..((((((....))))))..)))))..((((((.((((((((.((.(.(((..(...........)..)))----.))).)).)))))).)))))))))).)).. ( -35.20)
>DroYak_CAF1 17399 113 - 1
----GCGUCGUCUGCAACAUGUUGCACAACAUGCGGCGGGGUGAAGUGAAAAUGUGUGUAUGGUGGUG---GUGGUGGGUCUGCUGGCUGGCUGGGCAACAUUUUCAUUUUCGACUGCGU
----(((((((((((..((((((....))))))..)))))..(((((((((((((((.((.(.(((((---(..(.....)..)).)))).))).)).))))))))))))))))).)).. ( -41.10)
>consensus
CGUUGCGUCGUCUGCAACAUGUUGCACAACAUGCGGCGGGGUGAAGUGAAAAUGU__GUAUGGUGGUG___GUGGUGGGUCUGCUG____GCUGGGCAACAUUUUCAUUUUCGACUGCGU
....(((((((((((..((((((....))))))..)))))..(((((((((((((.....((((.......(..(.....)..)......))))....))))))))))))))))).)).. (-35.14 = -35.18 +   0.04)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:45 2006