Locus 7347

Sequence ID X_DroMel_CAF1
Location 18,337,442 – 18,337,562
Length 120
Max. P 0.807964
window12041

overview

Window 1

Location 18,337,442 – 18,337,562
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.17
Mean single sequence MFE -37.06
Consensus MFE -32.78
Energy contribution -32.70
Covariance contribution -0.08
Combinations/Pair 1.06
Mean z-score -1.42
Structure conservation index 0.88
SVM decision value 0.64
SVM RNA-class probability 0.807964
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18337442 120 + 22224390
AAGCAACUCCCCAUCCGAUCCCUCGGAGGAUACUUUAAAGGAGUCUGGAAUCUCGAUUGAUACGGCAAAUCUCUUCGUAUUGUUAAUCGUCUGUAUGAUCGGCUCGAACCGGGGCUGCAU
..(((...((((.(((((..(((..((((...))))..)))..)).)))...((((..(((((((.........)))))))((..(((((....)))))..))))))...)))).))).. ( -33.70)
>DroSec_CAF1 15384 120 + 1
AAGCAACUCCCCAUCCGAUCCCUCGGAGGAUACUUUGAAGGAGUCUGGAAUCUCGAUUGAUACGGCAAAUCUCUUCGUAUUGUUAAUCGUCUGUAUGAUGGGCUCGAAUCGGGGCUGCAU
..(((...((((.(((((..((((((((....))))).)))..)).)))...((((..(((((((.........))))))).....(((((.....)))))..))))...)))).))).. ( -36.20)
>DroSim_CAF1 15215 120 + 1
AAGCAACUCCCCAUCCGAUCCCUCGGAGGAUACUUUAAAGGAGUCUGGAAUCUCGAUUGAUACGGCAAAUCUCUUCGUAUUGUUAAUCGUCUGUAUGAUGGGCUCGAAUCGGGGCUGCAU
..(((.((((((.(((((....)))))))...........(((((((..(((.(((((((((..((..........))..)))))))))...).))..))))))).....)))).))).. ( -34.40)
>DroEre_CAF1 15005 120 + 1
GAGCAGCUCUCCAUCCGAUCCCUCGGAGGAUACUUUAAACGAGUCGGGAAUCUCGAUUGAUACGGCAAAUCUCUUCGUAUUAUUAAUCGUCUGUAUGAUGGGCUCGAAUCGGGGCUGCAU
..((((((((((.(((((....)))))))).........(((.(((((.........((((((((.........))))))))....(((((.....))))).))))).)))))))))).. ( -41.10)
>DroYak_CAF1 15394 120 + 1
AAGCAGCUCUCCAUCCGAUCCCUCGGAGGAUACUUUAAAGGAGUCUGGAAUCUCGAUUGAUACGGCAAAUCGCUUCGUAUUAUUAAUCGUCUGUAUGAUGGGCUCGAAUCGGGGCUGCAU
..((((((((((.(((((....))))))))..........(((((((..(((.(((((((((((((.....))..)))))))...))))...).))..)))))))......))))))).. ( -39.90)
>consensus
AAGCAACUCCCCAUCCGAUCCCUCGGAGGAUACUUUAAAGGAGUCUGGAAUCUCGAUUGAUACGGCAAAUCUCUUCGUAUUGUUAAUCGUCUGUAUGAUGGGCUCGAAUCGGGGCUGCAU
..(((.((((((.(((((....)))))))...........(((((((..(((.(((((((((..((..........))..)))))))))...).))..))))))).....)))).))).. (-32.78 = -32.70 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:40 2006