Locus 7344

Sequence ID X_DroMel_CAF1
Location 18,334,177 – 18,334,297
Length 120
Max. P 0.702238
window12031

overview

Window 1

Location 18,334,177 – 18,334,297
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.50
Mean single sequence MFE -45.30
Consensus MFE -39.86
Energy contribution -40.74
Covariance contribution 0.88
Combinations/Pair 1.11
Mean z-score -1.28
Structure conservation index 0.88
SVM decision value 0.35
SVM RNA-class probability 0.702238
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18334177 120 - 22224390
UUGAUCAGCAGGACGCUCCACUGGCGACCACCGAAUUUGUAGGGCACCAGGCAGUGGGCCACCAACUGUUGGAGCACCAGGCUUUUGCCACUGUUCCCUGGGCCGGAGAUCUCCACCAGC
......(((((...((((((((((.(.((((.......)).)).).))))(((((((....)).)))))))))))....(((....))).)))))..((((...(((....))).)))). ( -43.50)
>DroSec_CAF1 12176 120 - 1
UUGAUCAGCAGGACGCUCCACUGGCGACCACCGAAUUUGUAGGGCGCCAGACAGUGGGCCACCAACUGUUGGAGCACCAGGCUUUUGCCACUGUUCCCGGGGCCGGAGAUCUCCACCAGA
..(((((((((...((((((((((((.((((.......)).)).))))))(((((((....)).)))))))))))....(((....))).))))).(((....))).))))......... ( -49.30)
>DroSim_CAF1 12011 120 - 1
UUGAUCAGCAGGACGCUCCACUGGCGACCACCGAAUUGGUAGGGCGCCAGGCAGUGGGCCACCAACUGUUGGAGCACCAGGCUUUUGCCACUGUUCCCGGGGCCGGAGAUCUCCACCAAA
..(((((((((...((((((((((((.(((((.....))).)).))))))(((((((....)).)))))))))))....(((....))).))))).(((....))).))))......... ( -53.70)
>DroEre_CAF1 11858 120 - 1
UUGAUCAGCACGACGCUCCACUGGCGACCACCGAAUUUGUAGGGCGCCAAGCAGUGGGCUACCAAUUGUUGGAGCACCAGGCUUUUGCCACUGUUCCCGCUACCGGAAAUCUCCACCAGC
..((.(((......(((((..(((((.((((.......)).)).)))))((((((((....)).)))))))))))....(((....))).))).))..(((...(((....)))...))) ( -37.70)
>DroYak_CAF1 12135 120 - 1
UUGAUGAGCAGGACGUUCCACUGGCGACCACCGAAGUUGUAGGGCGCCAAGCAAUGGGCCACCAAUUGUUGGAGCACCAGGCUUUUGCCACAGUUGCCGGUGCCGGAAAUCUCCACCAGC
.......((.((......((((((((((.............((((.((((.((((((....)).)))))))).)).)).(((....)))...))))))))))..(((....))).)).)) ( -42.30)
>consensus
UUGAUCAGCAGGACGCUCCACUGGCGACCACCGAAUUUGUAGGGCGCCAGGCAGUGGGCCACCAACUGUUGGAGCACCAGGCUUUUGCCACUGUUCCCGGGGCCGGAGAUCUCCACCAGC
..(((((((((...((((((((((((.((((.......)).)).))))))(((((((....)).)))))))))))....(((....))).))))).(((....))).))))......... (-39.86 = -40.74 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:31 2006