Locus 7343

Sequence ID	X_DroMel_CAF1
Location	18,333,810 – 18,333,902
Length	92
Max. P	0.760514

overview

Window 0

Location	18,333,810 – 18,333,902
Length	92
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	89.31
Mean single sequence MFE	-24.46
Consensus MFE	-18.12
Energy contribution	-18.80
Covariance contribution	0.68
Combinations/Pair	1.17
Mean z-score	-1.95
Structure conservation index	0.74
SVM decision value	0.50
SVM RNA-class probability	0.760514
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18333810 92 - 22224390
AAAUCCAUUUUCACCACCCUGUGUUAUCGCCCAGCCGCCUAUCGCUGCUGGUGCCUAAUUUAGCCCUAACGCCUGGGCGAUGAUAGAAAAAA-
...................(.((((((((((((((.((.....)).))))).))........((((........))))))))))).).....- ( -27.90)
>DroSec_CAF1 11811 91 - 1
AAAUCCAUUUUCACCACCCUGUGUUAUCGCCCAGUCGCCUAUCGCUGCUGGUGCCUAAUUUAGCCCUAACGUCUGCGCGGUGAUAGAA-AAA-
..........(((((...(((.((((..(((((((.((.....)).))))).)).)))).)))......((....)).))))).....-...- ( -21.10)
>DroSim_CAF1 11645 91 - 1
AAAUCCAUUUUCACCACCCUGUGUUAUCGCCCAGUCGCCUAUCGCUGCUGGUGCCUAAUUUAGCCCUAACGCCUGCGCGGUGAUAGAA-AAA-
..........(((((.(.(.((((((..(((((((.((.....)).))))).))(((...)))...))))))..).).))))).....-...- ( -22.30)
>DroEre_CAF1 11490 92 - 1
AUUUUCAUUUUCACCACUUCUUGUUAUCGCCCAGCCGCCUAUCGCUGCUGGUGCCUAAAUUAGGCCUAACGCCUGCGCA-UGAUAGAGAAAAA
.................((((((((((((((((((.((.....)).))))).(((((...))))).........))).)-))))).))))... ( -24.10)
>DroYak_CAF1 11762 93 - 1
AGCUCCAUUUUCACCACCCUUUGUUAUCGCCUAGCCGCCUAUCGCUGCUGGUGCCUAAUUUAGGCGUAACGCCUGCGCGGUGAUAAAAAAAAA
..........(((((...((..((((..(((((((.((.....)).))))).)).))))..))(((((.....)))))))))).......... ( -26.90)
>consensus
AAAUCCAUUUUCACCACCCUGUGUUAUCGCCCAGCCGCCUAUCGCUGCUGGUGCCUAAUUUAGCCCUAACGCCUGCGCGGUGAUAGAAAAAA_
..........(((((...(((.((((..(((((((.((.....)).))))).)).)))).))).......((....))))))).......... (-18.12 = -18.80 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:30 2006