Locus 7342

Sequence ID X_DroMel_CAF1
Location 18,332,617 – 18,332,718
Length 101
Max. P 0.986111
window12029

overview

Window 9

Location 18,332,617 – 18,332,718
Length 101
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 82.43
Mean single sequence MFE -20.81
Consensus MFE -16.40
Energy contribution -16.88
Covariance contribution 0.48
Combinations/Pair 1.17
Mean z-score -2.56
Structure conservation index 0.79
SVM decision value 2.03
SVM RNA-class probability 0.986111
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18332617 101 - 22224390
AUUCUCCAAAACCGGCUUUGUAAUGGCCCUAACCAACCAACUAUCAAAUUCGGAUAGAGUGAGAAAAUAACCUCAUAAAAGU-------------CAUUUUUACUGCACAGCCA
.............((((.(((((((((.............(((((.......))))).(((((........)))))....))-------------)))......)))).)))). ( -21.30)
>DroSec_CAF1 10632 96 - 1
AUUCUCCAAAACCGGCUUUGUAAUGGCCCUAACC----AACUAUCAAAUUCGGAUAGAGUGAGAAAAGAACCUCACAA-AUU-------------CAUUCUUACUACGCAGCCU
.............((((.((((.(((......))----).(((((.......))))).(((((........)))))..-...-------------.........)))).)))). ( -21.20)
>DroSim_CAF1 10476 96 - 1
GUUCUCCAAAACCGGCUUUGUAAUGGCCCUAACC----AACUAUCAAAUUCGGAUAGAGUGAGAAAAGAACCUCACAA-AUU-------------CAUUCUUACUACGCAGCCU
.............((((.((((.(((......))----).(((((.......))))).(((((........)))))..-...-------------.........)))).)))). ( -21.20)
>DroEre_CAF1 10314 110 - 1
ACUCUCCAAAACCGGCUUUGUAAUGGCCCUAACC----AACUAUCAAUUUCGGAUAGAGUGAGAAAAGAACCUCACAAAAGUCCCAUUCCCAUAGCAUCUUUACUACACAGCCU
.............((((.((((((((..((....----..(((((.......))))).(((((........)))))...))..)))).................)))).)))). ( -22.82)
>DroYak_CAF1 10559 103 - 1
AUUCUCCAAAACCGGCUUUGUAAUGGCUCUAACC----AACUAUCAAAUUCGGAUAGAGUGAGAAUAGAAUCUCAAAAAAGA--CAUUCCCAUAGCACUUUUACUACGC-----
..............(((.((.((((((((((.((----.............)).))))))((((......))))........--))))..)).))).............----- ( -17.52)
>consensus
AUUCUCCAAAACCGGCUUUGUAAUGGCCCUAACC____AACUAUCAAAUUCGGAUAGAGUGAGAAAAGAACCUCACAAAAGU_____________CAUUUUUACUACGCAGCCU
.............((((.((((..................(((((.......))))).(((((........)))))............................)))).)))). (-16.40 = -16.88 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:29 2006