| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,324,994 – 18,325,114 |
| Length | 120 |
| Max. P | 0.755741 |
| Location | 18,324,994 – 18,325,114 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.10 |
| Mean single sequence MFE | -29.11 |
| Consensus MFE | -22.43 |
| Energy contribution | -22.77 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.755741 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18324994 120 - 22224390 AGCGAUUCUUUUCAGCUCCAAUCCUAUGAAGCCACUGAAAAGGUGGUUUCUCUACCUAUGUAUAUUGUUUUGAUAUGAGUAUAUAUAAGAUAAUUUAUAAAUGUAUGAAAGGUGAGCUUA ...((......))(((((....(((..(((((((((.....)))))))))(((((...((((.(((((((((((((....)))).))))))))).))))...))).)).))).))))).. ( -29.10) >DroSec_CAF1 3063 109 - 1 AGCGAUUCUUUUCAGCUCCAAUCCUAUGAAGCCACUGAAAAGGUGGUUUCUCCAC------ACACUGGGUUGAUAUGAGUAUAUAU-----AAUGUAUAAAUUUAUGCGAGUUGAGCUGA ...........(((((((((((((...(((((((((.....))))))))).....------.....)))))).(((((((.(((((-----...))))).)))))))......))))))) ( -31.82) >DroSim_CAF1 2932 109 - 1 UGCGAUUCUUUUCAGCUCGAAUCCUAUGAAGCCACUGAAAAGGUGGUUUCUCCAC------ACACUGGGUUGAUAUGACUAUAUAU-----AAUGUAUAAAUUUAUGCGAGGUGAACUGA ......((..((((.(((((((((...(((((((((.....))))))))).....------.....)))))..(((((.(((((..-----...)))))...))))))))).))))..)) ( -26.42) >consensus AGCGAUUCUUUUCAGCUCCAAUCCUAUGAAGCCACUGAAAAGGUGGUUUCUCCAC______ACACUGGGUUGAUAUGAGUAUAUAU_____AAUGUAUAAAUUUAUGCGAGGUGAGCUGA ...........(((((((....(((..(((((((((.....)))))))))...........................................((((((....))))))))).))))))) (-22.43 = -22.77 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:28 2006