Locus 7339

Sequence ID X_DroMel_CAF1
Location 18,318,492 – 18,318,583
Length 91
Max. P 0.989558
window12025

overview

Window 5

Location 18,318,492 – 18,318,583
Length 91
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 75.75
Mean single sequence MFE -16.43
Consensus MFE -10.80
Energy contribution -12.53
Covariance contribution 1.73
Combinations/Pair 1.25
Mean z-score -2.16
Structure conservation index 0.66
SVM decision value 2.17
SVM RNA-class probability 0.989558
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18318492 91 + 22224390
GAGUGUUUGCCAAUUGCGAUGGAUCAGGCAGUCCUGAUCCCAAAUAGAAAUAAUAUA-CAUACAAAAAAAACAAAAACUUUACUUUUCCCAA
(((((.((((.....)))).((((((((....)))))))).................-......................)))))....... ( -15.90)
>DroSec_CAF1 34373 80 + 1
GAGUGUAUGCCAAUUGCGGUGGAUCGGGCAGUCCUGAUCCCAAAUUGAAAAAAUA-A-UAUGCAAAAAAA---AAAAC-------UUCCUAA
..(((((((((......)))((((((((....))))))))...............-)-))))).......---.....-------....... ( -17.80)
>DroYak_CAF1 43242 80 + 1
GAGUGUAUGCCAAUUUUGUGGGAUCGAG-----CUGAUCCCAAAUAGAAAUAAUAUAUUAUACAAAAAAACAAAGAAC-------UUGCUAA
.(((((((....(((((.(((((((...-----..)))))))....))))).)))))))...................-------....... ( -15.60)
>consensus
GAGUGUAUGCCAAUUGCGAUGGAUCGGGCAGUCCUGAUCCCAAAUAGAAAUAAUAUA_UAUACAAAAAAA__AAAAAC_______UUCCUAA
...((((((...........((((((((....))))))))....((....))......))))))............................ (-10.80 = -12.53 +   1.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:25 2006