Locus 7337

Sequence ID X_DroMel_CAF1
Location 18,312,010 – 18,312,115
Length 105
Max. P 0.553258
window12022

overview

Window 2

Location 18,312,010 – 18,312,115
Length 105
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 78.39
Mean single sequence MFE -20.05
Consensus MFE -12.57
Energy contribution -12.95
Covariance contribution 0.38
Combinations/Pair 1.12
Mean z-score -1.69
Structure conservation index 0.63
SVM decision value 0.04
SVM RNA-class probability 0.553258
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18312010 105 + 22224390
UACCAGGCGAUCAAUCAUUUUGGCUUAUGCCAUAACAUGCAUAAUUUUAAACAAUCAAUAAUAAUGAUUGUAAUACAAGCAUA---AU------------GAUAAAUUCGCUUUAAUAGU
....((((((...((((((...((((((((........))))........(((((((.......))))))).....))))..)---))------------)))....))))))....... ( -24.00)
>DroSec_CAF1 27823 108 + 1
UACCAGGCGAUCAAUCAUUUUGGCUUUCGCCAUAACAUGCGUAAUUUUAAACAAUCAAUAAUAGUGAUUGUAAUUCAAGAAUUAGCAU------------CAUAGUUUCGCUUUAAUAGU
....((((((..........((((....))))....((((.(((((((..(((((((.......)))))))......)))))))))))------------.......))))))....... ( -21.80)
>DroEre_CAF1 18875 117 + 1
UACCAGGCUAUCAAUCAUUUUGGCUUAUGCCGUAACAUCCAUAAUUUUAAAUAAUCAAUAACAAUGAUUGUUAUACAAG---UAGCUGCAUCGUUCGCCCCAUAAGUUCGCUUUAAAAAC
....((((...(((.....)))(((((((..(((((.............((((((((.......))))))))......(---(....))...))).))..)))))))..))))....... ( -15.70)
>DroYak_CAF1 36747 120 + 1
UACCAGCCUAUCAAUCAUUUUGGCUUAUGCCACAACAUGCAUAAUUUUAAACAAUCAAUAAUUAUGAUUGUAAUACAAGAAUUAGCUUCAGUGUUUCUCGGAUAAAUUUGCUUUAAAAAU
....(((..((..(((....((((....)))).(((((((.(((((((..(((((((.......)))))))......)))))))))....))))).....)))..))..)))........ ( -18.70)
>consensus
UACCAGGCGAUCAAUCAUUUUGGCUUAUGCCAUAACAUGCAUAAUUUUAAACAAUCAAUAAUAAUGAUUGUAAUACAAGAAUUAGCAU____________CAUAAAUUCGCUUUAAAAAU
....((((((..........((((....))))..................(((((((.......)))))))....................................))))))....... (-12.57 = -12.95 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:23 2006