Locus 7336

Sequence ID X_DroMel_CAF1
Location 18,297,899 – 18,297,995
Length 96
Max. P 0.609599
window12021

overview

Window 1

Location 18,297,899 – 18,297,995
Length 96
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 83.73
Mean single sequence MFE -30.69
Consensus MFE -22.56
Energy contribution -23.36
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.65
Structure conservation index 0.74
SVM decision value 0.15
SVM RNA-class probability 0.609599
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18297899 96 + 22224390
AUCCAACCUGUCGCCCCC-CUUUUCGCCCUGUGCACUAUGGGCGU-GUGCCACGCCC--CCGUCUUGGCACAAGUCUGGAAUUUCAAUCUAGACAGAAGG
.................(-(((((.....(((((.....((((((-(...)))))))--........))))).(((((((.......))))))))))))) ( -30.32)
>DroSec_CAF1 11527 95 + 1
UUUCAACCUGUCGUCCCCGCUUUUCGCCCUGUGCACUGUGGGCG---UGCCACGCCC--CCUUCUUGGCACAGGUCUGGAAUUUCAAUCUAGACAGAAGG
.......(((((.........(((((.(((((((...(.(((((---.....)))))--.)......)))))))..)))))..........))))).... ( -31.31)
>DroSim_CAF1 10680 95 + 1
UUUCAACCUGUCGUCCCCGCUUUUCGCCCUGUGCACUGUGGGCG---UGCCACGCCC--CCUUCUUGGCACAGGUCUGGAAUUUCAAUCUAGACAGAAGG
.......(((((.........(((((.(((((((...(.(((((---.....)))))--.)......)))))))..)))))..........))))).... ( -31.31)
>DroEre_CAF1 5684 94 + 1
AUCUAAGCUGCCGCCC---UUUUUCGCCCAGUGCACAGGGGGCG---CGCCACGCCCCCCCAUCUUGGCCCAGGUCUGGAAUUUCAAUCUAGACAGAAGG
......((....))((---((((..(((.((((....(((((((---.....))))))).)).)).)))....(((((((.......))))))))))))) ( -32.80)
>DroYak_CAF1 12239 84 + 1
-----------CAACC---UUUUUCGCCCUGUGCACUGUGGGCGUUGUGCCACGCCC--CCUUCUUGGCCCAGGUCUGGAAUUUCAAUCUAGACAGAAGG
-----------...((---((((.....(((.((...(.((((((......))))))--.)......)).)))(((((((.......))))))))))))) ( -27.70)
>consensus
AUCCAACCUGUCGCCCCC_CUUUUCGCCCUGUGCACUGUGGGCG___UGCCACGCCC__CCUUCUUGGCACAGGUCUGGAAUUUCAAUCUAGACAGAAGG
.....................((((...((((((.....(((((........)))))..........))))))(((((((.......))))))).)))). (-22.56 = -23.36 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:22 2006