Locus 7335

Sequence ID X_DroMel_CAF1
Location 18,297,750 – 18,297,866
Length 116
Max. P 0.638852
window12020

overview

Window 0

Location 18,297,750 – 18,297,866
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 76.43
Mean single sequence MFE -22.62
Consensus MFE -12.95
Energy contribution -13.80
Covariance contribution 0.85
Combinations/Pair 1.26
Mean z-score -1.73
Structure conservation index 0.57
SVM decision value 0.22
SVM RNA-class probability 0.638852
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18297750 116 - 22224390
AUACAUAAAUUGGAAGUUUCAUCUAAAAGUGGGACUCCUGCUUGCACGCAUUUUAUUUGU----AUUUAUACAUAAGAUCAUACCUUGCUCAUCUUAGUCCUAUAAAACACCAUCAUAAA
.((((......(((.((..(((......)))..)))))(((......))).......)))----)((((((..((((((((.....))...))))))....))))))............. ( -17.10)
>DroSec_CAF1 11376 120 - 1
AUACAUAAAUUGGAAGCUUCAUCCAAAAGUGGGACUCCUGGUUGCAAGCAUUUUGCUUGUAAAUACUUAUACAUAAGAUCAUACCUUGCUCAUCUUAGUCCUAUAAAACAUCAUCAUAAA
.........(((((.......)))))..(((((((......((((((((.....))))))))...........((((((((.....))...)))))))))))))................ ( -25.30)
>DroSim_CAF1 10529 120 - 1
AUACAUAAAUUGGAAGCUUCAUCCAAAAGUGGGACUCCUGGUUGCAAGCAUUUUGCUUGUAAAUACUUAUACAUAAGAUCAUACCUUGCUCAUCUUAGUCCUAUAAAACAUCAUCAUAAA
.........(((((.......)))))..(((((((......((((((((.....))))))))...........((((((((.....))...)))))))))))))................ ( -25.30)
>DroEre_CAF1 5548 98 - 1
AUAAAUAAAUUC--------A-GCAAAAAUGUGGCUCCCGGUUGCAAGCAUCUCGCUUUU----ACUUACGAGUGUG---------UAGGCAACUUAGUCCUAUAACUAAGCAGCAUAAA
............--------.-......((((.(((...((((((..((((((((.....----.....)))).)))---------)..))))))((((......))))))).))))... ( -21.60)
>DroYak_CAF1 12102 116 - 1
AUACAUAAAUUGGAGCCAUCAUCCAAAAAUGGGAGUCCUGUUUGCAAGCAUUUUGCUUGU----ACUUAUGCAUAAGGUCAUGUCUUUCGCAUCUGCGUCCUAUAAGUUAGCAACAUAAA
.........(((((.......)))))..(((((((.(((((.(((((((.....))))))----).....))...))).)........(((....)))))))))................ ( -23.80)
>consensus
AUACAUAAAUUGGAAGCUUCAUCCAAAAGUGGGACUCCUGGUUGCAAGCAUUUUGCUUGU____ACUUAUACAUAAGAUCAUACCUUGCUCAUCUUAGUCCUAUAAAACAGCAUCAUAAA
.........(((((.......)))))..((((((((.......((((((.....)))))).....((((....))))...................))))))))................ (-12.95 = -13.80 +   0.85)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:21 2006