| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,297,506 – 18,297,616 |
| Length | 110 |
| Max. P | 0.976876 |
| Location | 18,297,506 – 18,297,616 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 67.84 |
| Mean single sequence MFE | -22.17 |
| Consensus MFE | -13.06 |
| Energy contribution | -11.95 |
| Covariance contribution | -1.10 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.59 |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.976876 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18297506 110 - 22224390 -------UU--ACAUUUUUUAACAAAGCUUCA-AAAUAGCAAGAAUUUAUGCUUAAGCCAGAUUAGCAGAAUUACUGGCUUUUCCCAGAACAAAAUGGUGCACAAGCAUGGAUAGUUCUA -------..--...............(((...-....))).((((((((((((((((((((.............)))))))...(((........))).....)))))))...)))))). ( -22.32) >DroSim_CAF1 10315 95 - 1 -------UU--ACAUUUUUGAACAAAGCUUCA-AAAUAGCAAGAAUUUAUGCUUAAGCCAGAUUAGCAGAAUUGCUGGCUUUUCCCACAACAAAAUGGUAGCCAA--------------- -------..--....(((((((......))))-))).(((((.......((((...........))))...)))))((((....(((........))).))))..--------------- ( -17.30) >DroYak_CAF1 11885 105 - 1 GGCUAUAUUAUGUAUUUUUGAAGCAAGCUUCGAAAUUGGCAAAAAUGUGUGCUUAAGCCGGAUUAGAAGAAGUGUUGGCUUUUGCCAAAACAAAAUAU-------------GUAGUAC-- .(((((((..(((..((((((((....))))))))((((((((............(((((((((......))).)))))))))))))).)))....))-------------)))))..-- ( -26.90) >consensus _______UU__ACAUUUUUGAACAAAGCUUCA_AAAUAGCAAGAAUUUAUGCUUAAGCCAGAUUAGCAGAAUUGCUGGCUUUUCCCAAAACAAAAUGGU___CAA_______UAGU_C__ ............((((((........(((........))).........((...(((((((.............)))))))....))....))))))....................... (-13.06 = -11.95 + -1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:20 2006