Locus 7333

Sequence ID X_DroMel_CAF1
Location 18,292,247 – 18,292,342
Length 95
Max. P 0.764566
window12018

overview

Window 8

Location 18,292,247 – 18,292,342
Length 95
Sequences 3
Columns 115
Reading direction forward
Mean pairwise identity 83.33
Mean single sequence MFE -28.50
Consensus MFE -23.23
Energy contribution -24.57
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -1.82
Structure conservation index 0.82
SVM decision value 0.51
SVM RNA-class probability 0.764566
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18292247 95 + 22224390
ACAGAUCCUCCCAUGGACCAAUGAACCAAUGAUACCCCA--------------------CCCACACCAACGACAUGUUGGGGGAGUGUAUCAGAAAGUUGCUACACUUUAUGGGC
.........((((((((.....((((...((((((.(..--------------------(((...(((((.....)))))))).).))))))....))).).....)))))))). ( -23.90)
>DroSec_CAF1 5480 112 + 1
ACGGAUC---CCAUGGACCAAUGAACCAAUGAUCCCCCACCCACAGACCCACAGACAAACCCACACCAACGACAUGGCGGGGGAGUGUAACAGAAAGUUGCUACACUUUAUGGGC
..(((((---...(((.........)))..)))))............((((........(((.(.(((......))).))))(((((((.(((....))).)))))))..)))). ( -28.80)
>DroSim_CAF1 4130 112 + 1
ACGGAUC---CCAUGGACCAAUGAACCAAUGAUCCCCCAACCACAGACCCACAGACAAACCCACACCAACGACAUGGUGGGGGAGUGUAUCAGAAAGUUGCUACACUUUAUGGGC
..(((((---...(((.........)))..)))))((((....................(((.(((((......))))))))(((((((.(((....))).)))))))..)))). ( -32.80)
>consensus
ACGGAUC___CCAUGGACCAAUGAACCAAUGAUCCCCCA_CCACAGACCCACAGACAAACCCACACCAACGACAUGGUGGGGGAGUGUAUCAGAAAGUUGCUACACUUUAUGGGC
..(((((....(((......))).......)))))((((....................(((.(((((......))))))))(((((((.(((....))).)))))))..)))). (-23.23 = -24.57 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:19 2006